Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0400 ATGGAGGCGCGTCGAACCTCTCGAATCCCCATCGATCCTAAAGTGCGCCAGGTAGGGTTTTTTGCCCCCGGTGCACTGCGGGATCGCTCACAGTCTGGTCCCCTTGGGTTCTCGTCGTCGCCTCCAGTCTCCAACATCTCGCCGACGGGAAACTCCCTCTCACCGGTCATGATCCCACCGCCGCGGCACGCATCCGACAACTTTGTGCTGTCGCGGCCCCTTGCAGTGCCGGTTTCGGATTCGACGCTTCGGCCGCCGGCGGTGGAAGATCGCATGGCGGTTGGGAGCTACGACGCTTCGGAGTTGCTTCTCGGGACGTCGGCGTCCAGCAGGATCGGAGACGGGGAGTTCTCCGAGGACTATTCGGTTTTTTTTCGCCGGAGCAGTTCGGGGAAGTTTGCTTCGTCTTTGCCGAGCGGTGGGTTTGATTCGACGGCGATGAAAATTAATCCTCCTGCGGTGGTTCCAGCCGTAAAAAAATATGCCGCAAAAAAACCTGCCGCAGTGATTGAAAAGAGTGGAGGAGCAGTTGCAGAAATGCAAAATGAATTGCCAACAAGCTCAAAACCATTGAAAGAGAAAACTACAAAGGCTGAAAGACGTGCCCTTCAGGAGTCTCAACGAGCAGCAAAAGCTGCTGGAAAAGCTGGAGGAAATAAACCAGCTGCTGCTTCTGGGGCTGCAACTCCAATGAAAGAAAAGGCAAGTAAAGCTGTGAAGCAGGTTCCATCTTCTGTTGCTGCTTCTGACAAAAAAGGAGGTGAGCGGATTCCAGAAAAAGATAAGAAGAAAGATGTTCCTCCTCCTCGCATGCAATTTGACGACAAGAACAGGGTGGAAAAGGCTAAAAGGCGTGCAGTGGTCAAACCAACTGAAGCTAGAAACAGAGTTGAACTGTTCCGGCATTTGCCTCAATACGAACATGGAACCCAGCTCCCCAAACTTGAGTCAAAATTTTTTCAACTTGATCCAGTGCATCCTGCTGTTCAAAAGGTTGGATTCCAGTATTTGGCAGGAGATATAGTTGGGGGTAATGCCCGTTGCATTGCAATGCTTCGAGCATTTCAGGAAGCCATTAAAGACTACTCCATGCCACCTGAAAAAACTCTAGCAAGAGATTTAACTGCAAAAATCAGCAGTTATGTTTCATTTTTGAATGAATGCAGGCCCCTTTCAATCAGCATGGGAAATTCAATCAGATTCCTAAAGAACAGGATTGCCAAGTTACCTTTAACTGTGTCTGAATCAGAGGCAAAAGATGCTCTTTATTCAGATATAGATCGTTTCATTAATGAGAAGATAGTACTTGCAGACAAGGTGATAGTCAGACATGCTGCAACAAAGATCAGGGATGGAGATGTTCTTCTCACGTATGGTTTCTCATGTGTTGTCGAGATGACCATGTTATATGCTCATGAACTTGGGAGACAGTTCCGTGTTGTGGTAGTAGACTCACATCCAAAATTTGAAGGCCAAGCATTACTTCGTAGGCTGGTGGAAAAGGGCCTGAGTTGTTCATATACTCAGATAAATGCTGTTTCTTATATCATGCATGAAGTAACACGAGTTTTTCTGGGGGCTGCCTCTATATTTTCTAATGGAACTGTGTACTCAAGGGTTGGAACTGCTTGTGTTGCCATGGTTGCTCATGCATTTCGTGTTCCTGTGTTAATTTGTTGCGAAGCATATAAATTTCATGAAAGGGTACAGCTTGACTCCATTTGTTCAAATGAACTTGGTGACCCGGATGTTATTTCAAAGGTTGCAGGACGAGCAGATGTGAATTATTTGGATAATTGGCGTGACAAGGAAAATCTTCAACTTTTGAATTTAATCTATGATGCTACTCCGTCAGATTATGTCTCTATGATTATCACTGATTATGGCATGGTCCCACCCACAAGTGTGCCTGTCATTGTGCGTGAATACCGAGAGCATTTGTGGATATAA 1950 0.4651 MEARRTSRIPIDPKVRQVGFFAPGALRDRSQSGPLGFSSSPPVSNISPTGNSLSPVMIPPPRHASDNFVLSRPLAVPVSDSTLRPPAVEDRMAVGSYDASELLLGTSASSRIGDGEFSEDYSVFFRRSSSGKFASSLPSGGFDSTAMKINPPAVVPAVKKYAAKKPAAVIEKSGGAVAEMQNELPTSSKPLKEKTTKAERRALQESQRAAKAAGKAGGNKPAAASGAATPMKEKASKAVKQVPSSVAASDKKGGERIPEKDKKKDVPPPRMQFDDKNRVEKAKRRAVVKPTEARNRVELFRHLPQYEHGTQLPKLESKFFQLDPVHPAVQKVGFQYLAGDIVGGNARCIAMLRAFQEAIKDYSMPPEKTLARDLTAKISSYVSFLNECRPLSISMGNSIRFLKNRIAKLPLTVSESEAKDALYSDIDRFINEKIVLADKVIVRHAATKIRDGDVLLTYGFSCVVEMTMLYAHELGRQFRVVVVDSHPKFEGQALLRRLVEKGLSCSYTQINAVSYIMHEVTRVFLGAASIFSNGTVYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGDPDVISKVAGRADVNYLDNWRDKENLQLLNLIYDATPSDYVSMIITDYGMVPPTSVPVIVREYREHLWI* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0400 649 MobiDBLite consensus disorder prediction 252 284 - -
Vvi17g0400 649 Gene3D - 437 643 IPR042529 -
Vvi17g0400 649 MobiDBLite consensus disorder prediction 190 206 - -
Vvi17g0400 649 MobiDBLite consensus disorder prediction 172 284 - -
Vvi17g0400 649 MobiDBLite consensus disorder prediction 23 59 - -
Vvi17g0400 649 Pfam Initiation factor 2 subunit family 341 633 IPR000649 GO:0044237
Vvi17g0400 649 MobiDBLite consensus disorder prediction 32 53 - -
Vvi17g0400 649 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 48 645 - -
Vvi17g0400 649 SUPERFAMILY NagB/RpiA/CoA transferase-like 326 643 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0400 Vvi-Chr17 4483254 4492528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0400 1 649 Eukaryotic Initiation Factors Gene Family AT5G38640 62.182 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0400 K03680 - vvi:100243979 1222.22