Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0394 ATGGAAATTGGAATCCATGCAAATTCTCTTGCTTGCGCACGGTTGAGGTGTCCAGGTGCAATTTTCCAGCCACAGATGTTCCTCTCCAACAGCAATGGCAACAATCCCATTTCTTACCCCGACCAAACAATTCTCCATGCCCCTTTTATCACTGATGTCAGCCACAATTCTCAACAGGAAGACCCTCCGTCTTCCTTCTTCTACTTTCCGTCTCCCTTTATTCACTACGAAGATGATGCTTTTCTCCAACACAATGACCTAATACCACAACTGCAAGCCCTCATGCCTGGTGATACTCTAGCTGATACTATGGTTAACATGGTAAATTCAAACAAAAACAGCAATGAACTAATAGGAGATCGCAAGCAAAGTAACAGTGTGACCGAGCCGATCATGCAAAAACGGTCTTCCAAGAGGGATCGGCACAGCAAGATAAATACTGCCCGAGGCCCCAGAGATCGGAGAATGAGATTGTCCCTCGAAATCGCTCGAAAGTTCTTTGATCTGCAAGACATGCTAGGCTTTGATAAAGCTAGTAAAACTGTTGAATGGTTACTAATAAAGGCCAAATCTGCCATCAAAGAACTGTCAAGAGGCGGGAGCATCTCTAAGGGCAAGCGCTCAAAGTGTCTTACCAAAGAGAGAAAGACTAGACAGTCGCGTAAGAATGCATTTCAACCTCTTGCCAGGGAGTCGAGGGAAAAGGCAAGAGCAAGGGCAAGGGAGAGGACAAGAGAAAAGATGTGGAGTAGGAGACTTGATGAATCAAAAGTATGTGCTGAAGCAAACAGTCATGACTTGAACCACTTAGGTTCTATAAGTTCCTTCGAAACCGGGGAAGAATCTGGTTCCCAAAGTCACAACCTGATTCCATCTTTGGAGCTCCTGCCCGAGGTTGAAGAACCGAGCTCCAATGAGCAACATCATTCAGGGATTACAGAAGCCATGCTTGATAATTCTTTAGTGATTATGAGCAAGCAGTGGAGCCCATCCTCCATTTTCAATTATCTCAACTTCGGAATTTCCCAAGAGCCTCAATTTCCAGGCTTTCAATTCCATGGAAAACCATGGGAGGCCCACAGCAACCAAAATCTATGCTAA 1101 0.4505 MEIGIHANSLACARLRCPGAIFQPQMFLSNSNGNNPISYPDQTILHAPFITDVSHNSQQEDPPSSFFYFPSPFIHYEDDAFLQHNDLIPQLQALMPGDTLADTMVNMVNSNKNSNELIGDRKQSNSVTEPIMQKRSSKRDRHSKINTARGPRDRRMRLSLEIARKFFDLQDMLGFDKASKTVEWLLIKAKSAIKELSRGGSISKGKRSKCLTKERKTRQSRKNAFQPLARESREKARARARERTREKMWSRRLDESKVCAEANSHDLNHLGSISSFETGEESGSQSHNLIPSLELLPEVEEPSSNEQHHSGITEAMLDNSLVIMSKQWSPSSIFNYLNFGISQEPQFPGFQFHGKPWEAHSNQNLC* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0394 366 Pfam TCP family transcription factor 137 204 IPR017887 -
Vvi17g0394 366 Pfam TCP family transcription factor 206 250 IPR017887 -
Vvi17g0394 366 ProSiteProfiles TCP domain profile. 138 196 IPR017887 -
Vvi17g0394 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 116 358 IPR005333 GO:0003700
Vvi17g0394 366 MobiDBLite consensus disorder prediction 217 245 - -
Vvi17g0394 366 MobiDBLite consensus disorder prediction 196 245 - -
Vvi17g0394 366 ProSiteProfiles R domain profile. 230 247 IPR017888 -
Vvi17g0394 366 MobiDBLite consensus disorder prediction 114 153 - -
Vvi17g0394 366 MobiDBLite consensus disorder prediction 114 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0394 Vvi-Chr17 4343550 4345620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0394 126 205 TCP Transcription Factor Family AT1G68800 65.432 6.62e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi17g0394 TCP 2.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0394 - - vvi:100250877 611.298