Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0392 ATGAGCTGGCGAAGAGTGGCGAAGTCCCTGCAGGCTCTCACAGCCCATTCCTTGCTTCTCTCCTTCACCCTTCTTCTCGTCCTCAAGCTCCATCACACCATATCCTACTCTTGGTGGATTATCTTTTTCCCACTTTGGCTATTTCATGCAGTTGTTGCTCGAGGAAGATTCTCTTTGCCTGCCCCACTAGTTCCACATAATCGTCATTGGGCACCATGTCATGCTGTTGTTGCAACACCGCTGCTTATTGCATTTGAACTTCTCCTTTGTATATATCTCGAAAGCATTTATGCTTATGGTCATGCAGCTGTGAACTTGAAGATCATCTTTCTTCCCTTGTTGGCCTTTGAAATAACAATACTAGTTGACAATTTCAGAATGTGTAAGGCGCTAATGCCAGGAGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAGACACTTCCTCACTTTTGGGTTGCAATCTCCATGGTCTTCTTTGTTGCTGCTACATTGTTCACCCTTCTAAAGCTATGTGGTGATATAGGTGCTCTAGGCTGGTGGGACTTGTTCATAAATTTTGGCATTGCAGAGTCCTTTGCCTTCCTTGTTTGTACAAAGTGGTCTAATCCAGTGATCCATAGAAATTCTCACACAACAGAAGCTGGTTCATCTTCTACAACTATTAGATATCTTGACTGGAACAGTGGTTTAGTAGTTTCTACAGATGAGGATCAGCACCAGGATAGAATGTGTGGGCTGCAAGACATTGGTGGTCATATCATGAAAGTTCCATTAATTGGATTCCAAGTCCTTCTTTGTATGCGCTTAGAGGGAACACCTGCTGCTGCTAGAGATATCCCAATTCCAGTTCTTTTTTCACCTATTTTCTTACTTCAAGGCGCTGGGGTTCTGTTTTCTGCATCAAGGTTGGTTGAGAAAATTGTTCTTTTACTACATAATGGAGCTGGGACAGGAAGATATTTTACATATTCTTCTAGAGCTCATGATTGCTTTGGGTTCCTGCACCATGGTTCCAGGCTCCTGGGTTGGTGGTCCATTGATGAAGGAAGTCGTGAAGAACAGGCACGACTTGTCCATGATGGGGCAGGATATAACACTTTCTGTGGTTATCCTCCTGAGATAGTGAAGAAAATGCCTAAGAAGGATCTTGCTGAGGAGGTGTGGAGACTTCAAGCTGCACTTGGTGAGCAATCAGAAATCACAAAGTACAGTAAGCAGGAGTATGAAAGACTTCAAAATGCAAAGGCACATAAGAAGGATATATTAATATGA 1275 0.4306 MSWRRVAKSLQALTAHSLLLSFTLLLVLKLHHTISYSWWIIFFPLWLFHAVVARGRFSLPAPLVPHNRHWAPCHAVVATPLLIAFELLLCIYLESIYAYGHAAVNLKIIFLPLLAFEITILVDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATLFTLLKLCGDIGALGWWDLFINFGIAESFAFLVCTKWSNPVIHRNSHTTEAGSSSTTIRYLDWNSGLVVSTDEDQHQDRMCGLQDIGGHIMKVPLIGFQVLLCMRLEGTPAAARDIPIPVLFSPIFLLQGAGVLFSASRLVEKIVLLLHNGAGTGRYFTYSSRAHDCFGFLHHGSRLLGWWSIDEGSREEQARLVHDGAGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQSEITKYSKQEYERLQNAKAHKKDILI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0392 424 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 416 - -
Vvi17g0392 424 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0392 Vvi-Chr17 4278718 4305424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0392 1 388 C3H Transcription Factor Family AT1G18470 78.663 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0392 - - vvi:100256061 830.091