Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0389 ATGTCAAGTGAAGTTCCAGTATGGAGCAGAGAGGAAGAGAAGGCTTTCGAGAATGCTATTGCCATGCACTGGACCGAAGACTGCAAGGAGGTGTGGGACAAGATTGCTTCCATGGTTCCTGGCAAGAGCGTTGATGAGCTGAAGCAACACTACCAATTTCTCGTTGAGGATGTGAATGCAATTGAGGCTGGTCATATCCCACTTCCCAACTATGCTGCCGATGAAGCCTCGTCTTCTTCTGTCAAGGACCATCATGCTCTTCCCTCTGCCACTTCTGATAAGCGATCCAATTGCGGTTTCGGAGGTGGGTTTTCAGGATTGGGTCATGACTCAGCTGTACAAGGAGGGAAAGGAGGATCTAGGTCGGAGCAGGAGCGGCGGAAAGGCATTCCATGGACAGAAGAGGAGCATAGGCTGTTTCTACTGGGTCTGGACAAGTTTGGAAAAGGGGATTGGAGAAGCATTTCCAGGAACTTTGTAATCTCCAGGACTCCCACTCAAGTGGCGAGCCACGCACAGAAGTACTTTATTCGCCTGAATTCCATGAACAGGGATAGGAGGAGATCCAGTATCCATGACATTACAAGTGTGAACAATGGCGATGTGTCAACCCCTCAAGCTCCAATTACCGGCCAGCAGGGCAACGGCAACCCAGCAAGCGCAGCTGCAGCTGGTGTGGGACCACCCCTGAAGCACCACAGGGCTCAGCCAAGCATGCCAGCAGGTGCTCTGGGAATGTATGGAACACCTATGGGACATCCAGTGGCCGCTCCTCCAGGGCATATGGCATCAGCAGTTGGGACTCCTGTTATGCTTCCTCCTGGACCCCATGCACCTCCCTATGTTGTCCCAGTTGCTTACCCCATGGCACCACCTCCAATGCACCAATAG 891 0.5253 MSSEVPVWSREEEKAFENAIAMHWTEDCKEVWDKIASMVPGKSVDELKQHYQFLVEDVNAIEAGHIPLPNYAADEASSSSVKDHHALPSATSDKRSNCGFGGGFSGLGHDSAVQGGKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVSTPQAPITGQQGNGNPASAAAAGVGPPLKHHRAQPSMPAGALGMYGTPMGHPVAAPPGHMASAVGTPVMLPPGPHAPPYVVPVAYPMAPPPMHQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0389 296 SUPERFAMILY Homeodomain-like 126 181 IPR009057 -
Vvi17g0389 296 MobiDBLite consensus disorder prediction 109 130 - -
Vvi17g0389 296 MobiDBLite consensus disorder prediction 187 236 - -
Vvi17g0389 296 Gene3D - 2 68 - -
Vvi17g0389 296 Pfam Myb-like DNA-binding domain 131 176 IPR001005 -
Vvi17g0389 296 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Vvi17g0389 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 178 IPR006447 GO:0003677
Vvi17g0389 296 PANTHER TRANSCRIPTION FACTOR KUA1 8 273 - -
Vvi17g0389 296 MobiDBLite consensus disorder prediction 193 219 - -
Vvi17g0389 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Vvi17g0389 296 ProSiteProfiles SANT domain profile. 3 59 IPR017884 -
Vvi17g0389 296 SMART sant 4 57 IPR001005 -
Vvi17g0389 296 SMART sant 128 178 IPR001005 -
Vvi17g0389 296 CDD SANT 131 176 IPR001005 -
Vvi17g0389 296 CDD SANT 8 52 IPR001005 -
Vvi17g0389 296 Gene3D - 130 182 - -
Vvi17g0389 296 ProSiteProfiles Myb-like domain profile. 8 55 IPR001005 -
Vvi17g0389 296 FunFam Transcription factor SRM1 1 68 - -
Vvi17g0389 296 ProSiteProfiles SANT domain profile. 132 180 IPR017884 -
Vvi17g0389 296 FunFam transcription factor MYB1R1 130 181 - -
Vvi17g0389 296 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
Vvi17g0389 296 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0389 Vvi-Chr17 4225877 4226898 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0389 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0389 - - vvi:100245771 544.658