Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0362 ATGGGGAAGAACGAGTTTCTGACGCCAAAAGCGATTGCGAATCGGATCAAAGCCAAGGGTTTGCAGAAGCTGCGATGGTATTGTCAAATGTGCCAAAAACAATGCCGGGACGAGAATGGATTCAAGTGTCATTGTATGAGCGAGAGCCACCAACGTCAGATGCAAGTCTTTGGCCAAAACCCTAATCGCATCATCGACGGTTATTCAGAGGAGTTCGAGCGCGAATTCCTTGAGCATATGAAGCGCAGCCACCGCTTCAGCCGTGTCGCCGCCACCGTCGTCTACAACGAGTACATCGCCGACCGCCACCACATCCATATGAACTCTACCGAGTGGGCTACGCTGACCGAGTTTGTGAAGTATTTGGGGCGAACCGGGAAGTGCAAGGTCGAGGAGACGCCGAAAGGGTGGTTTATCACCTATATTGATCGAGATTCGGAGACTCTATTCAAAGAGAGGCTGAAGAATAAGCGAATGAGGGCAGACATGGTAGAGGAGGAGAAGCAAGAGAGGCAAATTAAGAGACAGATTGAGAAAGCTGAACAGTTGATGCCATTGGTAGGTGGATCTTCTCAGCCTAATGAGTCGGAGCTAGTATCTCTGAAATCAGAGAATGGTGGTAAGATCGCCTTTGCCCTGGGTTCATCTAAACTTATTGTGAAAGAAAAAGTGGAGAGCTCGAAATTGGTGTTTGAGGATGGTGAGAGTGAGAACATTGTGAAAGGTAAAGGTGCTGGTGGCAGTGGGATTGGGGGCGTATCAGCATTAGATGAATTAATGAGAGAGCAAGAGAAGGTGAAGGAACGGAATAACAGAAAGGATTATTGGTTGTGCGAGGGAATTGTTGTGAAGGTCATGAGCAAAGCTCTGGCCGAGAAGGGTTACTATAAGAAAAAGGGGATTGTGCTCAAAGTGATAGATAGGTATGTTGGGGAAATTGAAATGCTCGACAGCAAGCATGTGCTTAGAGTTGATCAAGAGGAGCTGGAGACTGTCATTCCACAAATCGGAGGTCTTTTGAGGATTGTGAATGGGGCTTATCGGGGATCAAATGCAAGGTTATTAGCAGTGGACACAGAGAAGTACTCTGCAAAGGTGCAGATAGAGAAGGGAATTTATGATGGAAGGGTGCTTCAGGCAGTTGAATATGAAGATATTTGCAAAGTTGGGCAGTGA 1176 0.4702 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQVFGQNPNRIIDGYSEEFEREFLEHMKRSHRFSRVAATVVYNEYIADRHHIHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERLKNKRMRADMVEEEKQERQIKRQIEKAEQLMPLVGGSSQPNESELVSLKSENGGKIAFALGSSKLIVKEKVESSKLVFEDGESENIVKGKGAGGSGIGGVSALDELMREQEKVKERNNRKDYWLCEGIVVKVMSKALAEKGYYKKKGIVLKVIDRYVGEIEMLDSKHVLRVDQEELETVIPQIGGLLRIVNGAYRGSNARLLAVDTEKYSAKVQIEKGIYDGRVLQAVEYEDICKVGQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0362 391 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 389 IPR037321 -
Vvi17g0362 391 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vvi17g0362 391 Coils Coil 156 183 - -
Vvi17g0362 391 Gene3D - 280 333 - -
Vvi17g0362 391 Gene3D - 334 390 IPR014722 -
Vvi17g0362 391 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vvi17g0362 391 FunFam DNA/RNA-binding protein KIN17, putative 334 390 - -
Vvi17g0362 391 Gene3D - 60 160 IPR038254 -
Vvi17g0362 391 SMART Kin17_mid_2 52 178 IPR019447 -
Vvi17g0362 391 CDD KOW_KIN17 336 389 IPR041995 -
Vvi17g0362 391 FunFam DNA/RNA-binding protein kin17-like 280 333 - -
Vvi17g0362 391 Pfam KN17 SH3-like C-terminal domain 272 325 IPR041330 -
Vvi17g0362 391 SUPERFAMILY beta-beta-alpha zinc fingers 26 62 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0362 1 390 C2H2 Transcription Factor Family AT1G55460 71.290 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0362 K13102 - vvi:100256009 762.681