Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0353 ATGGATCAAGATATGATGAATAAGAAACCGAACACAAAGAAACCTAGCATGTTAGAGGTTTCACAGCCGATGAGGAGAGTTCGAGTCACTTACTGTGATCCCGATGCCACCGATTCTTCCAGTGAAGATGAAGAATACAATGGCAAGAAGAAGCAATTGCTGAGATCCAAACGCACTGTCAAGGAGTTGTTTGTTCATGGAATTCCATATGAATCATCAGCAGAGACTTCTCCCCATATCAGTAATAATGGGGGCAAACTCAGCACCAAGTTTGACAGCAAAATTCAGAAAACCCCAAGATCATCCTCTATTTATAAAGGAGTTAGGCGCAGGAAGTGGGGAAAATATGCAGCAGAGATCAGAGACCCAATTCGAGGGGTTCGAATGTGGCTTGGTACTTATAATACTGCAGAAGAAGCTGCCAAAGCTTATCAAACGAAGAAGCTCGAGTTTGATACCATTCTTGGATCGGAGAAGCTTAAGAATAAGCATTCATCACCTTCAAGTTCAGCTGTTACATGCTCTTCAAGGCAGAAGCCATCTTCCTCAGAAGAGACCAATGGCTTATTTTCTCATCCCTCTCCATCATCTGTCCTGGAGATCTCCCGATCGGCTTCAATTGGCTCTGGCAATTCAGTTAAAGAAGATGACAATGCAATGAGAAACGACAAAGAAGAGCAACCTATTTCGTCTTTGACTGGCCCTGCCAGTTCAATTACAGAAGATAATGCCATGGAAGAAGACAAGGTTCCTGCTGCATCCCTCTTGGAAGAGCCCTTGTTTTTCCCACCATTCAATCAAGAGCTTAACTTGGGTTTTGACGACAACTCTTTATTTGGGAACAACTTTGAAGAATTTTTCGATGATCTCGACATGGAGGGTCTTCCAATGTGCGGTTTTGAAGATGGTGCAACAAATGGCCTTCCCAACTTCGACTTTGAGCTGGACAAGGAATTCGCATGGGTTGATGAAACCTTAAATATAGCCTGCCTCTAA 996 0.4327 MDQDMMNKKPNTKKPSMLEVSQPMRRVRVTYCDPDATDSSSEDEEYNGKKKQLLRSKRTVKELFVHGIPYESSAETSPHISNNGGKLSTKFDSKIQKTPRSSSIYKGVRRRKWGKYAAEIRDPIRGVRMWLGTYNTAEEAAKAYQTKKLEFDTILGSEKLKNKHSSPSSSAVTCSSRQKPSSSEETNGLFSHPSPSSVLEISRSASIGSGNSVKEDDNAMRNDKEEQPISSLTGPASSITEDNAMEEDKVPAASLLEEPLFFPPFNQELNLGFDDNSLFGNNFEEFFDDLDMEGLPMCGFEDGATNGLPNFDFELDKEFAWVDETLNIACL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0353 331 SUPERFAMILY DNA-binding domain 103 151 IPR016177 GO:0003677
Vvi17g0353 331 ProSiteProfiles AP2/ERF domain profile. 104 163 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 CDD AP2 103 144 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 Gene3D AP2/ERF domain 104 158 IPR036955 GO:0003700|GO:0006355
Vvi17g0353 331 MobiDBLite consensus disorder prediction 1 52 - -
Vvi17g0353 331 MobiDBLite consensus disorder prediction 74 95 - -
Vvi17g0353 331 PIRSF PTI6 2 250 IPR017392 GO:0003700
Vvi17g0353 331 PIRSF PTI6 271 318 IPR017392 GO:0003700
Vvi17g0353 331 MobiDBLite consensus disorder prediction 160 215 - -
Vvi17g0353 331 MobiDBLite consensus disorder prediction 160 242 - -
Vvi17g0353 331 Pfam AP2 domain 104 144 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 SMART rav1_2 104 158 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Vvi17g0353 331 MobiDBLite consensus disorder prediction 225 240 - -
Vvi17g0353 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 233 - -
Vvi17g0353 331 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0353 Vvi-Chr17 3717278 3718273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0353 16 330 AP2-EREBP Transcription Factor Family AT1G68550 34.139 8.30e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi17g0353 AP2 4.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0353 - - vvi:104882341 666.381