Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0348 ATGAGAGAATTTGGCAATAAATACAAGCAGTTTCCCATCAAACACAAATTTACAATTTTCTCACATCCTTTTCTCTTTCCCAAACCACTTGCGCCCTCAAACCCACGCCCTCCCTCACTTAAATATCCCCCCACATCTCCTCTTCCATCCCCTCACTCTTTCTCCTCCCCTTTTCCCCATTTTCTCGCCCTTTTTTCCTCCTTTCCAAACACCCCAGCCATGCGGATGAGTTGTAATGGCTGTCGAGTCCTTCGCAAAGGCTGTAATGATAGCTGCACTCTCAGACCTTGCCTTCAGTGGATCAAAAACCCCGATTTTCAAGCCAATGCCACCGTCTTCCTCGCCAAATTTTACGGCCGCGCTGGCCTCATCAACCTTATCAATGCTGGCCCCGAACACCTCCGCCCTGCTATATTCAGATCATTGCTGTACGAGGCTTGTGGGAGGATCGTGAATCCGATATACGGCTCGGCCGGGCTTCTGTGGTCGGGAAGCTGGCAACTTTGTCAGTCGGCGGTGGAAGCAGTGCTCAGCGGCGCTCCGATCATGCAGATTTCGGCTGAGTCGGCCGTCAGCAGCATGAGCCCGCCGTTGAAAGCAGGAGATATTCGGCACGTGTCAAAGGATGAGAACTCTGCTGGCTCTTCTCACGAGCTTCACAAGGTTAAGAGCAGGGGGCGGTTCAAGCGCTCGAGTGGGAAGCCCAGGGCCAGAGTGGAGTCGGCTGCGGAGTTCGACGAATCGGCTGGGGTTATCCTAAGCCGGTGCTATAAAAGCGAGCTGAGTCGTGACTCGAGAGTGAGTCATCCAGGGAGCCGCGAGAGCGGAGAAGCAGACAGCATGTCGGTGGAGACTGTGGAGGCTTCGCTAGTGAAGCCGACGCGTGATGGGAGCGACGTGGAGCTGGAGCTGACACTGGGCTTGGAGCCGATTCCAAAGGTGCAGAAGGCGTGTGCCGTGGTGAGAGAGAAGGAAGAGATGGCCGGCTCAGAAGACGACACCTGTAAAGTGGAACTGGCTCTTGAATACTCTGGTTAA 1038 0.5443 MREFGNKYKQFPIKHKFTIFSHPFLFPKPLAPSNPRPPSLKYPPTSPLPSPHSFSSPFPHFLALFSSFPNTPAMRMSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSSMSPPLKAGDIRHVSKDENSAGSSHELHKVKSRGRFKRSSGKPRARVESAAEFDESAGVILSRCYKSELSRDSRVSHPGSRESGEADSMSVETVEASLVKPTRDGSDVELELTLGLEPIPKVQKACAVVREKEEMAGSEDDTCKVELALEYSG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0348 345 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 76 306 - -
Vvi17g0348 345 MobiDBLite consensus disorder prediction 208 237 - -
Vvi17g0348 345 Pfam Lateral organ boundaries (LOB) domain 77 175 IPR004883 -
Vvi17g0348 345 MobiDBLite consensus disorder prediction 263 283 - -
Vvi17g0348 345 ProSiteProfiles LOB domain profile. 76 182 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0348 Vvi-Chr17 3660462 3661599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0348 74 341 AS2 family AT3G02550 52.920 7.07e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi17g0348 LOB 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0348 - - vvi:100245622 544.273