Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0346 ATGCTTCCTAATTTAAATTTGCCAGTAAAAGCTTCAGTAGAGGAATTGAGGGCCTGCTTGATTGATGGTGCTGTTTTATGTCGGTTTTTGAACAGACTGAGACCTGGTTCTGTGAGTGAGGTGCGTGATTATGATCATTCTTCTGGGATGCGCTATGAAAATGTTAAAAAGTTTCTGGAGGCTTTGGACGCATTAGGGATGCCCGGGTTTGAAATTGCAGACCTGGAAAAGGGATCTATGAAGACTGTTTTGGAGTGCATTTTAACACTTAAAGCACACACTATACCAACTGTATGTGGAAATAATTTTCCATTCAGTAGTTCATTTTCTAAATCTGGAAACATTGGTCCTCAAGTGGATGATCCTTCGCGTGGGCCTACACCATGTGGAGAAGACAGGCAAAAGAGTTTTTCAGAATCCAAATTTCAACGTGCTTTGCGTAGTCCTGTCAAGTCTGAGCCATCAGCTGCATTAATATATCATGTGGGACACAAGTTCCATGAGGTGTTTCAACTGAAACAAGGACGCTATGCGGATATTCCTGCTGCTAAGCTTACAGAAATGATGAAATCTAACAGTTTAGATAATGCCCCAACTCAGTCACTTTTGAGTGTTGTGAATGGAATTCTAGATGAAAGCGTTGAAAGGAAGAATGAAGAGATACCTCACCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACTCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAGATTGTATTGAATCATCTCCAGCAGATAAAGAAGAAGAAGGATCAAAGTGGCATTGAAATTTCAGCTTTGAAGCAAGAACTTGAAATAGCCAACAAAGAGAAGGATCAAAATAATATCGAAATTACTGCTCTGAAGCAAGAACTGGAAATAGCCAGGAAGACATATGAAGAACATTTCTCAGAAATGGAAAAGCAAGGTATGGGAGATAAAGCAGAGTTTGAGAAGAGGTCAAGGGAACTTGAGCAGCTCCTAGCCGATTCAAGGAATAAGATAAATAAACTTGAGGCTTATTCTGGGTTAGAAGGCCAAAGGTGGGATAAGAAAGAGCAAAGCTACCTGAGACTTGTGAATTTTCTATTCAGTGCCTTGCAGGGATTGAGGTCCACTTCCGAGTCCATCAAGAAAGAAGTATTGGAAACACAGAAGAGCTATTCAGAGGATTTTAAATGCTTAGGAGTAAAGCTAAAAGCATTAGTAGATGCCTCTGAAAACTATCATGCAGTTCTTGCTGAAAATAGGAGACTTTATAATGAGGTTCAAGATTTAAAAGGAAACATTAGGGTGTATTGCCGGATAAGGCCATTTCTCCGTGGGCAGAATGGAAAGCAGACAACCATAGAATATATTGGTGAAGATGGGGAGCTCGGTATTGTGAATCCCTCAAAACAAGGAAAAGACAGTCATCGGTTGTTCAAATTCAATAAGGTCTATGGCCCAGCTGCTACTCAAGCTGAGGTGTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGACTGGCCCCAATGCAGCATCCAAGGAGGAATGGGGTGTCAATTATCGTGCACTAAGTGACCTCTTTGAGATCACTCAAAGCAGGAGAAGCTCATTTATGTATGAAATTGGAGTTCAAATGGTTGAAATATACAATGAACAAGTGCGTGATTTACTATCAAGTGATATGAAAAATAGTTTTCATCCCCATGGGTTAGCTGTTCCTGATGCTACCATGCTCCCAGTCAAATCAACCTCAGATGTAATGGAATTAATGGACATTGGACAAAAGAATAGATCTGTAGGTGCCACTGCTATGAATGAAAGAAGTAGCCGCTCCCACAGTATTGTAACTATTCATGCTTGGGGGACGGATTTGAAGACTGGTGCTTCTTTGCGTGGCAGTCTTCACTTGGTGGATCTTGCAGGAAGTGAAAGGGTAGATCGCTCTGAGGTAACTGGAGAGAGACTTAGGGAAGCACAACATATAAACAAATCGCTATCTGCCCTTGGAGATGTTATCTTTGCTCTTGCCCAGAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAAGTCCTTCAGAGTTCTCTTGGTGGTCAAGCAAAGACTCTTATGTTTGTGCAGCTTAATCCTGATGTGAATTCATTTTCTGAAACTGCAAGTACTTTGAAATTTGCTGAGAGGGTTTCTGGAGTCGAGCTAGGTGCTGCACGGAGTAGCAAAGAGGGCAGGGACGTTAAGGAATTAATGGATCAGGTGGCATCTCTCAAAGACACAATTGCCAAAAAAGATGAGGAGATCGAACGGTTGCAACTACTTAAAGATCTCAAAAATGTACATCCTGGTCTCAACTGTGAGAGAAGTGTTACAGGTTCGTTTAAGTATGGATCTTCCCCACCAAGCAGGAATTTCGTGGGTGGGACTGCTCAACTAAGCCAGAAACTACCAGGTGGGAAAGGCTTAGGACCAGCTGAGAGAGCAGCTTCTGATCAGGACAACAGTTCAGAATACAGTGATAAGCATTCTGATGCTGATTCCCAGCAGTCCATGGAAGACTTTAAACAACCAAATGAATCCCTTCGGAAATCAAAGCTTGCCGGTGGGGACATAGGTCAGAATAATCCTGCAGATGCTTCGACCTTAGGATTTGGGGAGACAGATTGTGACGAGAGATCAAGTGATACATCTGATGGTGGTTTTCCTATGCGAACAGAAAATAATGGCCCTGCTCAATCTAAAGCATCAGAGACCACAGAGAAGTCTAAACCAGCCTCTAGAATAACAAGACCACCGCAAAGAACATTGCGAACTTCATCTCCTCCACCATCACATCTTAAGGATTCTCCAAAGGCGGCAACAGGTATGTAA 3030 0.4208 MLPNLNLPVKASVEELRACLIDGAVLCRFLNRLRPGSVSEVRDYDHSSGMRYENVKKFLEALDALGMPGFEIADLEKGSMKTVLECILTLKAHTIPTVCGNNFPFSSSFSKSGNIGPQVDDPSRGPTPCGEDRQKSFSESKFQRALRSPVKSEPSAALIYHVGHKFHEVFQLKQGRYADIPAAKLTEMMKSNSLDNAPTQSLLSVVNGILDESVERKNEEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKSREEKYQSRIRVLETLATGTNDENQIVLNHLQQIKKKKDQSGIEISALKQELEIANKEKDQNNIEITALKQELEIARKTYEEHFSEMEKQGMGDKAEFEKRSRELEQLLADSRNKINKLEAYSGLEGQRWDKKEQSYLRLVNFLFSALQGLRSTSESIKKEVLETQKSYSEDFKCLGVKLKALVDASENYHAVLAENRRLYNEVQDLKGNIRVYCRIRPFLRGQNGKQTTIEYIGEDGELGIVNPSKQGKDSHRLFKFNKVYGPAATQAEVFSDTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMTGPNAASKEEWGVNYRALSDLFEITQSRRSSFMYEIGVQMVEIYNEQVRDLLSSDMKNSFHPHGLAVPDATMLPVKSTSDVMELMDIGQKNRSVGATAMNERSSRSHSIVTIHAWGTDLKTGASLRGSLHLVDLAGSERVDRSEVTGERLREAQHINKSLSALGDVIFALAQKSSHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSFSETASTLKFAERVSGVELGAARSSKEGRDVKELMDQVASLKDTIAKKDEEIERLQLLKDLKNVHPGLNCERSVTGSFKYGSSPPSRNFVGGTAQLSQKLPGGKGLGPAERAASDQDNSSEYSDKHSDADSQQSMEDFKQPNESLRKSKLAGGDIGQNNPADASTLGFGETDCDERSSDTSDGGFPMRTENNGPAQSKASETTEKSKPASRITRPPQRTLRTSSPPPSHLKDSPKAATGM* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0346 1009 Coils Coil 350 377 - -
Vvi17g0346 1009 PRINTS Kinesin heavy chain signature 540 561 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 PRINTS Kinesin heavy chain signature 656 673 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 PRINTS Kinesin heavy chain signature 736 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 PRINTS Kinesin heavy chain signature 687 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 ProSiteProfiles Calponin homology (CH) domain profile. 1 95 IPR001715 GO:0005515
Vvi17g0346 1009 PANTHER KINESIN-LIKE PROTEIN KLP-3 332 989 IPR027640 GO:0003777|GO:0007018
Vvi17g0346 1009 Coils Coil 800 827 - -
Vvi17g0346 1009 SMART ch_5 8 93 IPR001715 GO:0005515
Vvi17g0346 1009 SMART kinesin_4 463 794 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 886 902 - -
Vvi17g0346 1009 Pfam Calponin homology (CH) domain 10 93 IPR001715 GO:0005515
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 846 1009 - -
Vvi17g0346 1009 ProSitePatterns Kinesin motor domain signature. 686 697 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi17g0346 1009 ProSiteProfiles Kinesin motor domain profile. 465 786 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 824 IPR027417 -
Vvi17g0346 1009 Pfam Kinesin motor domain 471 784 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0346 1009 SUPERFAMILY Calponin-homology domain, CH-domain 12 97 IPR036872 -
Vvi17g0346 1009 Coils Coil 286 345 - -
Vvi17g0346 1009 Gene3D - 1 95 IPR036872 -
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 846 864 - -
Vvi17g0346 1009 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 407 620 - -
Vvi17g0346 1009 Gene3D - 311 341 - -
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 978 998 - -
Vvi17g0346 1009 Gene3D Kinesin motor domain 407 788 IPR036961 -
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 951 972 - -
Vvi17g0346 1009 FunFam Kinesin-related protein3 623 828 - -
Vvi17g0346 1009 MobiDBLite consensus disorder prediction 111 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0346 Vvi-Chr17 3626431 3634245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0346 453 820 Calmodulin-binding Proteins AT5G65930 40.849 1.68e-73 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0346 K10406 - vvi:100254382 1397.88