Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0342 ATGATAAAAATGGAGGAGAGTCTTCCTCCTGGGTTCAGATTCCATCCAACAGATGAAGAACTCATTACTTATTATCTCACCCCCAAGGTTTCCAATACTAATTTCGCGTCCAGGGCTATTGCAGATGTCGATCTCAACAAGTGTGAACCTTGGGATCTCCCAGCCAAGGCTTCCATGGGAGAGAAAGAATGGTATTTCTTTAGCTTGAGAGACCGAAAATACCCGACAGGCATTCGAACCAACCGAGCAACTGAAGCAGGCTATTGGAAGACCACTGGGAAGGACAAGGAGATATACCGTGCTGGGATACTGGTAGGAATGAAGAAAACCCTAGTATTTTACAAGGGTAGAGCTCCTAAGGGTGAGAAAAGCAACTGGGTTATGCATGAATATAGGCTAGAAACCAAGCTTTCTTTCAAACCCAAAAAGGAGGAATGGGTTGTCTGTAGGGTCTTCAAAAAGAGCTCAGCAGTGAAAAAACCGCACCAGCCGGCACCGTCATCGCTACCATCTCTTGAATCTCCTTGTGATACAAACACAATTGTGAGCGAGTTCGGAGACATTGAGTTTCCAAATATGAATAGCATTGCGAATTCATCGAGTGGATTTAGCAATATTAATTCAGCGCAGAGCTATAACACTAGTACTGATGATAACCTCAACATGAATATGAACATGAACATGAATATGAATTGGGCTGCAGCAAGAGAAGCTGCAAGTCTCCCATCACTTCCATGGTCTTCAAGCTTGCTAAGCCCAAATCTTCAGATGAATTCCCTCCTTATTAAGGCATTACAGCTTGGGAGTTACAGACCAAGAGAAGCTACAAGTACTGAAAATTACTCCTTTCTGCCACAAGGGATTTCTAACTTTGGAACTGATTTTATCTCAAACTTTCAGGCTTCTTCTTCTAAGGTTTTAGACTCTCTTCACCAACAGCAACAGCAACAGCAACAGGAGCAACCATTCAACTTGGACTCCATTAATTGGTGA 993 0.43 MIKMEESLPPGFRFHPTDEELITYYLTPKVSNTNFASRAIADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGIRTNRATEAGYWKTTGKDKEIYRAGILVGMKKTLVFYKGRAPKGEKSNWVMHEYRLETKLSFKPKKEEWVVCRVFKKSSAVKKPHQPAPSSLPSLESPCDTNTIVSEFGDIEFPNMNSIANSSSGFSNINSAQSYNTSTDDNLNMNMNMNMNMNWAAAREAASLPSLPWSSSLLSPNLQMNSLLIKALQLGSYRPREATSTENYSFLPQGISNFGTDFISNFQASSSKVLDSLHQQQQQQQQEQPFNLDSINW* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0342 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 236 - -
Vvi17g0342 330 Pfam No apical meristem (NAM) protein 9 133 IPR003441 GO:0003677|GO:0006355
Vvi17g0342 330 Gene3D NAC domain 17 159 IPR036093 GO:0003677|GO:0006355
Vvi17g0342 330 ProSiteProfiles NAC domain profile. 8 154 IPR003441 GO:0003677|GO:0006355
Vvi17g0342 330 MobiDBLite consensus disorder prediction 310 330 - -
Vvi17g0342 330 FunFam NAC domain-containing protein 100-like 17 158 - -
Vvi17g0342 330 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0342 Vvi-Chr17 3581986 3583649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0342 4 328 NAC Transcription Factor Family AT3G18400 60.241 2.69e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi17g0342 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0342 - - vvi:100266459 614.379