Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0337 ATGGCAACAGCTCCCGCAATTTCAACTAGGAGTTTGCCGTCATTTGAAGGGCTTCGACCTTCAACAGTCAGAGTGCCTTTGGTTCGTCTGCCACTAAGAGCAGCGGGTCTCACACAGAGGCCGGTCAGGGGTCTGGTTGTCAGAGCTGCCACTTCAATTGGCCCCAAGTATACTTCCTTGAAGCCCTTGGCTGATAGAGTGCTGGTGAAGATTAAAACTGTGGAGGAGAAGACCGGAGGTGGTATTTTACTTCCAACAACAGCTCAAACAAAACCTCAAGGAGGGGAGGTTGTTGCTGTTGGAGAGGGCAGGACAGTTGGGAAGAACAAAGTAGACATTGGTGTAAAGACCGGTACCTCGGTAGTGTATTCCAAGTATGCCGGGACTGAGTTGGAGTTCAATGGATCAAATCATCTTATATTGAAGGAAGATGATATAGTCGGTATTCTTGAGACAGACGATATCAAGGATCTGAAGCCCTTGAATGATAGAGTCTTAATCAAGGTTGCTGTGGCCGAAGAAAAGACTGCTGGAGGCTTGTTGCTTACTGAGGCAACAAAGGAGAAACCTTCCATTGGCACTGTGATTGCAGTTGGACCTGGGTCTCTGGATGGGGAGGGTAATAGGAAACCACTGTCATTAAGCCCAGGCAGCACAATTATGTACTCCAAGTATGCAGGAAATGAGTTCAAGGGCAGTGATGGTTCTGATTACATAGCTTTACGGGCGTCTGATGTGATGGCTGTGCTTTCCTAG 756 0.4788 MATAPAISTRSLPSFEGLRPSTVRVPLVRLPLRAAGLTQRPVRGLVVRAATSIGPKYTSLKPLADRVLVKIKTVEEKTGGGILLPTTAQTKPQGGEVVAVGEGRTVGKNKVDIGVKTGTSVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTEATKEKPSIGTVIAVGPGSLDGEGNRKPLSLSPGSTIMYSKYAGNEFKGSDGSDYIALRASDVMAVLS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0337 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Vvi17g0337 251 FunFam 10 kDa chaperonin 156 251 - -
Vvi17g0337 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 57 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vvi17g0337 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Vvi17g0337 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vvi17g0337 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vvi17g0337 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Vvi17g0337 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Vvi17g0337 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi17g0337 251 FunFam 20 kDa chaperonin, chloroplastic 53 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0337 Vvi-Chr17 3541129 3546775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0337 2 251 Calmodulin-binding Proteins AT5G20720 72.400 1.79e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0337 K04078 - vvi:100267892 483.796