Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0332 ATGGCTGATTTCACTGCAGATTTGCAGGGGTTCAAAACCTCTTCATATCCCTTATTTGAAGCTGATCCAAACACGGGACTCATCAGCACCCAGTCCACAGAGCAGAATCAAGGTTTTTTCGACAATCCAAGCTTGAATTTCCAGGCCCTTGAGACCTTCTTCTCACAGCAACCGCCAGAGTTTCCGGGAAACCTGTCAGAAATTTTCCAGCAGAAGGTGGCGGTGCCGATGGCTCAGGCGGAGGTTTCCGCTGGAGATAGTTTATGTGAGAACAAGAAGAGGAAGGCAAGGGTGGATGCATCAGAAAGCAGCTCTGGGAACTCTTCCACTCCGGCTTGTGAGAGTGGGCTTAAGAGGGGGAAAAATAGTTCAGGAAGAGGGAAGAGAGCCATGAAAAGCATTGAGAAGGAAGATGAGAAACCAAGGGAGGTGGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACAGACAGTCACAGCTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAGACTCAGATGCTTACAAGACATTGTCCCAGGATGCTACAAGACTATGGGAATGGCAGTCATGTTGGATGAAATCATCAATTATGTCCAATCCTTGCAAAATCAAGTTGAGTTTCTTTCCATGAAGCTTACTGCAGCAAGCCAATATTATGACTTCAACTCAGATACAGATACCTTAGAAACAATTCAGAGGGGAAAGGTACATGGAGAGCAACCTCCTTCAACTCAACATGGTCCCATTGACTTGACTTTTGGCTCTTACTCCTCTTTGCCATACAACACATGA 798 0.4612 MADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQPPEFPGNLSEIFQQKVAVPMAQAEVSAGDSLCENKKRKARVDASESSSGNSSTPACESGLKRGKNSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDFNSDTDTLETIQRGKVHGEQPPSTQHGPIDLTFGSYSSLPYNT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0332 265 MobiDBLite consensus disorder prediction 101 117 - -
Vvi17g0332 265 MobiDBLite consensus disorder prediction 237 265 - -
Vvi17g0332 265 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Vvi17g0332 265 SMART finulus 159 209 IPR011598 GO:0046983
Vvi17g0332 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 222 IPR036638 GO:0046983
Vvi17g0332 265 MobiDBLite consensus disorder prediction 247 265 - -
Vvi17g0332 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Vvi17g0332 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 240 IPR024097 GO:0006355
Vvi17g0332 265 MobiDBLite consensus disorder prediction 128 159 - -
Vvi17g0332 265 MobiDBLite consensus disorder prediction 90 159 - -
Vvi17g0332 265 Gene3D - 150 223 IPR036638 GO:0046983
Vvi17g0332 265 CDD bHLH_AtBPE_like 143 228 - -
Vvi17g0332 265 FunFam transcription factor BEE 3-like 150 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0332 Vvi-Chr17 3477176 3478490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0332 53 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 59.375 8.16e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0332 HLH 8.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0332 - - vvi:100247374 530.791