Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0329 ATGTCATTAGCCTCCTCCTTGGACGATCCAATGATGGAGGTGAATGAGAGAGACATGGAACTTACTCAACATGGTTTCTTAGAGGAGTTCCTAGATCTAAGAGGAGAAACTTGGAACACATATCCTACTATGGATGAGTTCATTCCTGATGGTTGGAACTTTGATACTTTCAATGAGAATGTAGTTTTTGCTACAACAAATCCTTCATTGGAAGGATTTTCCATGTCAAAAGGGCCTGCATTTGAATATCCATTTAATGAAATTCATCCTTCTGTCGGTGGATTTACTGTACCAGAGATTGATTCATTACATGGCAAGAACATGATGCTACAATTTCCAATTCAGTACCCATCAGTGGTGAAGGATGAAGAGATCAGCCTACTCAACAATAGTCCTCACATTGTGGAAGAAAGGGATAATAGCTGCAAATTTGAGATGGAACAAGCTGCCAATACTCCAGTTTTCAGCACAAGTCCCTTTGGAGAGAGAAAGGCTCGAGTTAAGAAGATGGAGGGGCAGCCTTCAAAGAATCTAATGGCAGAAAGAAGGCGAAGGAAGCGACTGAATGATCGCCTTTCCATGCTCAGATCAATTGTTCCAAAAATAAGCAAGATGGACAGAACATCTATTCTTGGAGATGCCATAGATTATATGAGAGAGCTCCTAGAAAGAATGAATAAGTTGCAAGAAGAACAAATGCAAGCAGGCACAAGCAGAACCAACTCACCAGGCATCTTCAAGGAGCTAAAGCCAAATGGTATGATCACGAAAAATTCTCCAAAGTTTGATGTGGAAAGAAGAAATTTAGATACCCGGATTGAGATTTGCTGTGCAGAAAAACAAGGATTGTTGCTGTCAACTGTGAGCACGCTAAAAGCACTAGGACTTGAGATTCAACAGTGTGTCATAAGTTGCTTCAATGAATTTTCAGTGCAAGCTTCCTGTTCAGATGCAGCAGAGCAGCAAACAATGCTAAATTCTGAAGATATAAAGCAAGCATTATTCAGAAACGCAGGTTATTGA 1023 0.4037 MSLASSLDDPMMEVNERDMELTQHGFLEEFLDLRGETWNTYPTMDEFIPDGWNFDTFNENVVFATTNPSLEGFSMSKGPAFEYPFNEIHPSVGGFTVPEIDSLHGKNMMLQFPIQYPSVVKDEEISLLNNSPHIVEERDNSCKFEMEQAANTPVFSTSPFGERKARVKKMEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMRELLERMNKLQEEQMQAGTSRTNSPGIFKELKPNGMITKNSPKFDVERRNLDTRIEICCAEKQGLLLSTVSTLKALGLEIQQCVISCFNEFSVQASCSDAAEQQTMLNSEDIKQALFRNAGY* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0329 340 Pfam Helix-loop-helix DNA-binding domain 178 221 IPR011598 GO:0046983
Vvi17g0329 340 Coils Coil 211 238 - -
Vvi17g0329 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 339 - -
Vvi17g0329 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Vvi17g0329 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 234 IPR036638 GO:0046983
Vvi17g0329 340 Gene3D - 164 236 IPR036638 GO:0046983
Vvi17g0329 340 SMART finulus 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0329 Vvi-Chr17 3428366 3429713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0329 41 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 42.553 3.51e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0329 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0329 - - vvi:100264526 679.478