Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0327 ATGTATACTGCAGCGAGGAAAATCCAGAAAGATAAGGATTCTGAACCCACTGAATTTGAGGAATCAGTTGCACAGGCATTCTTTGATTTGGAGAATACCAACCCAGAAATCAAGAGTGACTTGAAGGATCTATACATAAATTCTGCTCTTCAAGTGGATGTCTCTGGCACCCGAAAGGCTGTTGTTATACATATCCCCTACAGACTGAGAAAAGCTTTCCGCAAGATTCATGTTAGGCTTGTGAGAGAGCTTGAGAAGAAGTTCAGTGGGAAGGATGTGATCTTCATTGCCACTCGGAGGATAGTGAGGCCCCCAAAGAAAGGTTCTGCTGTTCAACGGCCCCGTAGCCGCACACTCACTTCTGTGCATGAGGCAATGCTGGAAGATATTGTTCTACCTGCTGAGATAGTTGGGAAGCGCATCAGATACCGTCTTGATGGATCCAAGATAATCAAGATTTTCTTGGACCCAAAAGAACGCAACAACACTGAGTACAAGCTGGAGACCTTTGCTGCAGTTTACAGGAAGCTTTCAGGCAAAGATGTTGTCTTTGAGTACCCGCTGACGGAGGCTTAG 576 0.4549 MYTAARKIQKDKDSEPTEFEESVAQAFFDLENTNPEIKSDLKDLYINSALQVDVSGTRKAVVIHIPYRLRKAFRKIHVRLVRELEKKFSGKDVIFIATRRIVRPPKKGSAVQRPRSRTLTSVHEAMLEDIVLPAEIVGKRIRYRLDGSKIIKIFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPLTEA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0327 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vvi17g0327 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vvi17g0327 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0327 Vvi-Chr17 3414943 3416439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0327 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 77.487 8.40e-113 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0327 K02993 - vvi:100252536 372.859