Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0326 ATGCATAATGGTGAAGAGATAGCAGTGAAGAAACTCACGGTTGGTTCCACGCAAGGAGTGGAAGAATTCTCAAATGAAGTGGAAGTCTTGGTGAAAATGAGGCACCGGAACCTGGTCAAACTGCTCGGTTGTTGCACTCAAGGAGATGAAAAGATGTTGGTTTATGAGTATCTGCCTAACAAAAGTCTCAACTACTTCCTCTTCGATAAGAGTAGGAGTGCACTCCTTGATTGGCAAAAGCGCTCCAACATCATGGTGGGAGTAGCACGAGGGCTTCTTTATCTTCACGAAGATTCTCAAATCAGAATCATTCACAGAGACATCAAAACAAGTAACATATTGCTAGATGAACATATGAACCCCAAGATATCAGATTTTGGATTGGCAAAGCTTTTCCCAGATGAGCAAAGCCACCTTAGAACTCGCCGAATAGCTGGAACTGTAGGGTACATGGCTCCTGAATATGCTATTAGAGGTCTCATGTCAACAAAGATCGATGTTTTCAGCTTTGGGGTGTTGATGTTGGAAATTATAAGTGGTCGGAAGAACTACGACCCGCAGCTAGATGATCAAAGAAGAGAGCTTCTAAACCTGACACGCAGACTAGAAAGACAGGGAAGGTTGATGGAGCTTGTTGACACAACCATTGGTTCATTCCCAGAAGACGAAGTAAAGAAATGCATTCATATTGGATTGTTGTGCTGCCAAGATAACATGCAAGAAAGACTGACCATGTCATCTGCACTCATGCTGCTTTTGAATAATCCAGTAACCATGCCTCCTCCAGGAAGGCTAGGGTTTCAGGGCAGCAGAGAAAACACAAATGAATCATCTACATCAAATTCTGGCTCCTCCATTGTTCTTGAAAATGAGAATGTTTCAAATAATACCATGACTACTTCATTGACAAGTGCATTGGGTAGGGACCCAGGCAGGCAGACAAACTTGGGAGTTCTGAGCTGTCAAAGTCTGAAAATACTACACGTAATTCTACCTGGCGCTTCTCTTCACATTCACTTTCCCACAAGAGAGAGAAGGAGAAGCTTCTCTCATTCTCTCTCTGTACACCATACGTCAGGACACCCAAGTTTGAACCATCATATCCGGTCTCTACCCTTTGGGGACACTGGGAATCATATGGCCAATTGGGAGCTGAAGAAGTGTTGCAATCATGAACAGGTGGTGTTTCTCACCACCATCTCCATATGCACTGTGGTCATCCTCGCGCTATGGAGAACAATATTGCTGACACCATTCAAGCTTGTCACTGTATTTCTTCATGAAGCCAGTCATGCCATCGCTTGCAAACTAACATGTGGCCATGTAAGCAGCCTTTTTCTCCCTTCAACTTTTCGTGTATAA 1362 0.4376 MHNGEEIAVKKLTVGSTQGVEEFSNEVEVLVKMRHRNLVKLLGCCTQGDEKMLVYEYLPNKSLNYFLFDKSRSALLDWQKRSNIMVGVARGLLYLHEDSQIRIIHRDIKTSNILLDEHMNPKISDFGLAKLFPDEQSHLRTRRIAGTVGYMAPEYAIRGLMSTKIDVFSFGVLMLEIISGRKNYDPQLDDQRRELLNLTRRLERQGRLMELVDTTIGSFPEDEVKKCIHIGLLCCQDNMQERLTMSSALMLLLNNPVTMPPPGRLGFQGSRENTNESSTSNSGSSIVLENENVSNNTMTTSLTSALGRDPGRQTNLGVLSCQSLKILHVILPGASLHIHFPTRERRRSFSHSLSVHHTSGHPSLNHHIRSLPFGDTGNHMANWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCGHVSSLFLPSTFRV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0326 453 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0326 453 SUPERFAMILY Protein kinase-like (PK-like) 2 279 IPR011009 -
Vvi17g0326 453 MobiDBLite consensus disorder prediction 268 294 - -
Vvi17g0326 453 Gene3D Phosphorylase Kinase; domain 1 1 57 - -
Vvi17g0326 453 Pfam Peptidase M50B-like 402 447 - -
Vvi17g0326 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Vvi17g0326 453 Coils Coil 188 208 - -
Vvi17g0326 453 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 301 - -
Vvi17g0326 453 Pfam Protein kinase domain 2 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0326 453 MobiDBLite consensus disorder prediction 262 294 - -
Vvi17g0326 453 FunFam Uncharacterized protein 1 57 - -
Vvi17g0326 453 Gene3D Transferase(Phosphotransferase) domain 1 58 257 - -
Vvi17g0326 453 FunFam Cysteine-rich receptor-like protein kinase 41 58 258 - -
Vvi17g0326 453 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0326 Vvi-Chr17 3406359 3411171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0326 4 267 Receptor kinase-like Gene Family AT4G05200 53.585 6.81e-96 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi17g0326 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0326 - - vvi:100254237 582.408