Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0325 ATGAGTATCTTCCAAACAAGAGTCTTGACTGCTTCCTTTTTGACCTGGAACATGATGTTTTCAGATAAAACAAAGTCTGCATCCTTGGATTGGGCAACGAGGTTTCGAATAGTTATGGGTGTGGTGAGAGGTCTTCTTTACCTACATGAAGAGGCCCCTGAAAGGATTATTCATCGAGATATTAAAGCTAGTAACATATTGTTGGATGAAAAGTTAAATCCAAAGATCTCAGATTTTGGTTTGGCAAGGCTTTTTCCTGGGGATGAAACACATGTAAATACATTTAGGATTTCGGGTACTCATGGCTATATGGCTCCTGAGTACGCACTACATGGATACTTGTCTGTTAAAACGGATGTATTCAGTTTTGGGGTTTTGGTATTGGAGATTGTGAGCGGGAGAAAGAATCACAATTCACATCTGAGTGCAGAAAAGACGGACCTCTTGAGCTATACATGGAAGCTCTACCAAGGTGGGAAAGCATTAGAATTAGTTGACCCAAGCCTTGCCAAGTGTAATCCTGATGAGGCAGCAATGTGCATTCAGCTGGGATTGTTATGTTGTCAAGCAAGTGTTGCAGATAGACCCGATATGAACTCTGTCCATCTTATGCTATCAAGTGATTCCTTTAATTTGCCAAGACCAGGAAAACCTGGAATTCAAGGCCGAACTGGACGATGGACGACTACCACTTCAGCTTTCACAAATACTAATGCCACTAGTACCAGCACTGGTATTACCAAGGCTTCTGCTGGTAGTAGTTTTGTTGAGGAATACTCCAGAAATTCCATCTCCATTTCTTCTCTAGATGAAGGAAGATGA 822 0.4161 MSIFQTRVLTASFLTWNMMFSDKTKSASLDWATRFRIVMGVVRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGDETHVNTFRISGTHGYMAPEYALHGYLSVKTDVFSFGVLVLEIVSGRKNHNSHLSAEKTDLLSYTWKLYQGGKALELVDPSLAKCNPDEAAMCIQLGLLCCQASVADRPDMNSVHLMLSSDSFNLPRPGKPGIQGRTGRWTTTTSAFTNTNATSTSTGITKASAGSSFVEEYSRNSISISSLDEGR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0325 273 Gene3D Transferase(Phosphotransferase) domain 1 16 211 - -
Vvi17g0325 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Vvi17g0325 273 FunFam Cysteine-rich receptor-like protein kinase 41 12 211 - -
Vvi17g0325 273 SMART serkin_6 4 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0325 273 ProSiteProfiles Protein kinase domain profile. 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0325 273 SUPERFAMILY Protein kinase-like (PK-like) 25 205 IPR011009 -
Vvi17g0325 273 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 18 242 - -
Vvi17g0325 273 Pfam Protein kinase domain 32 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0325 Vvi-Chr17 3401091 3402803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0325 5 234 Receptor kinase-like Gene Family AT4G23140 47.581 5.20e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi17g0325 Pkinase 3.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0325 - - vvi:100254237 487.648