Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0318 ATGGCAACGCCACTAACGGGCGTTGCAGTGTTTTCAAGCCACGTGAATTCGTCGTCTTCGTCTTCCTCCTCCAAGTCTTGCTCGAACAATTCTGAGCTGAAATCCCCTATTCTAATCTTCTCGTTCTTCCACAAAGCAATACGTGTGGAGCTCGATGCGCTTCACCAATCCGCCATGGCGTTTGCCACTGGACAGCGGGCAGATATTCGTCCCTTGTTCAAGCGCTACCACTTCTTGAGATCAATCTATAAGCACCACTGCAATGCGGAGGATGAGGTCATCTTTCCAGCTCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCCCTTGAACACAAGGGTGAAAGTGACCTTTTTGATCATTTATTTGAGCTGCTAAAGTTAAATATGCAAAATGATGAAAGTTTTCCACGGGAATTGGCGTCTTGTACGGGAGCCCTTCAGACATCAGTTAGTCAGCACATGTCCAAGGAAGAGGAGCAGGTCTTCCCTTTGCTTACAGAGAAGTTCTCAGTTGAAGAGCAGGCATCATTAGTTTGGCAGTTTTTTTGCAGCATTCCTGTGAATATGATGGCAAAGTTCCTTCCATGGCTTTCATCCTCTATTTCACCTGATGAATATCAGGATATGCTGAAGTGCTTATACAAGATAGTCCCAGAAGAGAAACTTTTTCGACAGGTTATTTTCACCTGGATAGAAGCGCGAAACTGGGCTAACACAGTTGAAAATTGTACTGATGATCCTCAGCTCCAGTGTTGTAAAGGTTCTAGTACTGGCACATTTATCCAACAGATGGACAAAATAAATTGTGCATGTGAGTCCTCCAACGTTGGGAAAAGGAAATATTTGGAGTCTAGTGATGTTTTTGATACCGGTGGGATACATCCAATAAATGAGATATTGCATTGGCATAATGCTATTAGAAGAGAGTTGAGAGCTATATCTGAGGAGGCTAGGAAGATACAACGTTCAGGAAATTTTACTAATTTATCATCCTTCAACGAGAGGTTGCATTTTATTGCTGAAGTTTGCATCTTTCACAGCATTGCTGAAGATAAGGTAATATTCCCTGCAGTAGATGGAGAACTCTCCTTTTTCCAAGGGCATGCTGAAGAAGATAGTAAATTCAATGAGATTAGGTGCTTGATTGAAAATATTCAAAGTGCAGGAGCAAATTCTACATCAGCTGCTGAATTTTATGGGGAGTTATGCTCACATGCTGACAAAATAATGGAAACTATAAAGAGACATTTCGACAATGAAGAAGTCCAGGTTCTTCCACTTGCTCGGAAGCATTTTAGCTTCAAAAGGCAGCGGGAACTTTTGTATCAAAGCTTGTGCATGATGCCATTGAGATTGATTGAGCGTGTTTTGCCATGGCTGGTAGGATCATTAACTGATGATGAAGCCAAGAACTTTCTTAAAAATATGCATTTAGCAGCTCCAGCATCAGATACTGCTCTAGTAACACTTTTTTCTGGTTGGGCTTGCAAAGCTCGTGCAAAGGGTGTATGTTTGTCCTCAAGTGCAATTGGTTGCTGTCCTGCAAAAGAAATCACTGATATTGAAGAAGATTTTGTTCGACCACAATGTGGATGCACTTCTAACTTGTCTCCTAGAGAACACCCAGTATTTGTTCAAATAGATGGGAACAGAAGACCGGTCAAACGGAATTCATCAGTACCGTGCAAAAATGACCAAGCAACGGATTCTTCAGAGATGATAAGTGCTGATGAACTGTCTTCTAGTAATTGGTCTTGTTGTGTCCCAGATTTAGGTGTAAACGGTAATAATCTGGGATTGGGTTGTCTTTCTACGGTGAAATTTTTGCGTCCCTTGTCGTTCAGTTCTTCTGCTCCTTCTCTTAACTCCAGTCTCTTTATCTGGGAAACAGATAGTAGCTCTTCTCATATTGGGTGCACAGAGCGGCCAATTGATACCATATTTAAATTTCATAAAGCCATTAGCAAAGACTTGGAGTATTTGGATGTTGAATCGGGAAAGCTTATTGATTGTGATGAGACATTCCTTCAGCAGTTCATTGGAAGATTCCGTTTATTGTGGGGCTTATACAGGGCTCATAGTAATGCAGAGGATGAAATAGTTTTTCCAGCATTGGAATCCAAAGAGGCACTTCACAATGTAAGTCACTCATACATGCTTGACCACAAGCAGGAGGAAAATTTATTTGAAGATATTGCTTCTGTCCTTTCTGAGCTTTCACTCCTTCATGAAGACCTGAAAAGAGCCAGTATGACAGAGAATCTAAACAGGAGTCATGATGGCAAGCATCTGAGAAAGTACATTGAATTGGCTACAAAACTTCAAGGCATGTGCAAATCTATAAGAGTCACACTGGATCAGCATATTTTCAGGGAAGAACTTGAGCTGTGGCCACTGTTTGGCCAACATTTTTCTGTGGAGGAACAGGACAAAATTGTTGGCCGCATTATTGGGACTACAGGAGCTGAAGTCCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACTCAGGATGAGCAGAATAAAATGATGGACACATGGAAGCAGGCAACTAAGAACACAATGTTCAACGAGTGGCTCAATGAATGCTGGAAAGGAACTCCAGTGTCACCTTTAAAGACTGAAACATTGGAAAGTAGCATTCCTGAAAAAGGTATCTATTCCCAAGAAAACTTGGATGAGAATGATCAGATGTTCAAGCCAGGGTGGAAAGATATTTTTCGTATGAATCAAAGTGAGCTTGAATCAGAGATCAGAAAGGTTTATCGGGACTCAACTCTTGATCCAAGGCGAAAAGCATATCTTGTTCAAAATCTTATGACTAGTCGCTGGATAGCTGCTCAACAGAAGTTGCCTCAAGAAATAATGGGGGAAAGTTCTAATGGTGAAGATATACATGGACTATCACCATCGTATCGGGATCCAGGGAAACAGGTCTTTGGGTGTGAACACTACAAAAGGAATTGCAAACTCCGTGCTGCTTGCTGTGGCAAGTTGTTCACTTGCAGATTCTGCCATGATGAAGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGCATGCGCTGCCTGAAGATTCAAGCAGTTGGACCAATCTGCAAGACACCTTCATGCAATGGACTTTCAATGGCCAAGTACTATTGCAGTATATGTAAATTTTTTGATGATGAAAGGACCGTATATCATTGTCCATTTTGCAATTTATGTCGCCTTGGGAAGGGTCTTGGAATTGACTATTTTCATTGCATGACATGCAATTGTTGCCTGGGGATGAAGTTAGTGAACCACAAGTGTCTGGAGAAAGGTTTAGAAACAAATTGTCCTATTTGCTGTGATTTCTTGTTCACATCAAGTGCTGCAGTCAGAGCTCTACCCTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGTCACTACACCTGTCCTATTTGTAGCAAATCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTTTGTTGGTCGCTGAGGAGCTTCCAGAGGAATATAGAGATCGTTGTCAGGACATACTTTGCAACGACTGTGGTCGAAAAGGCGCATCACGCTTCCACTGGCTGTATCACAAGTGTGGTTTTTGTGGATCATACAATACCCGGGTGATAAAGACAGAGGCAACGAATTCTGATTGCCCCGCATCAAACCAATGA 3705 0.4194 MATPLTGVAVFSSHVNSSSSSSSSKSCSNNSELKSPILIFSFFHKAIRVELDALHQSAMAFATGQRADIRPLFKRYHFLRSIYKHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESDLFDHLFELLKLNMQNDESFPRELASCTGALQTSVSQHMSKEEEQVFPLLTEKFSVEEQASLVWQFFCSIPVNMMAKFLPWLSSSISPDEYQDMLKCLYKIVPEEKLFRQVIFTWIEARNWANTVENCTDDPQLQCCKGSSTGTFIQQMDKINCACESSNVGKRKYLESSDVFDTGGIHPINEILHWHNAIRRELRAISEEARKIQRSGNFTNLSSFNERLHFIAEVCIFHSIAEDKVIFPAVDGELSFFQGHAEEDSKFNEIRCLIENIQSAGANSTSAAEFYGELCSHADKIMETIKRHFDNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLRLIERVLPWLVGSLTDDEAKNFLKNMHLAAPASDTALVTLFSGWACKARAKGVCLSSSAIGCCPAKEITDIEEDFVRPQCGCTSNLSPREHPVFVQIDGNRRPVKRNSSVPCKNDQATDSSEMISADELSSSNWSCCVPDLGVNGNNLGLGCLSTVKFLRPLSFSSSAPSLNSSLFIWETDSSSSHIGCTERPIDTIFKFHKAISKDLEYLDVESGKLIDCDETFLQQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYMLDHKQEENLFEDIASVLSELSLLHEDLKRASMTENLNRSHDGKHLRKYIELATKLQGMCKSIRVTLDQHIFREELELWPLFGQHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKGTPVSPLKTETLESSIPEKGIYSQENLDENDQMFKPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQEIMGESSNGEDIHGLSPSYRDPGKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATSEMMCMRCLKIQAVGPICKTPSCNGLSMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGIDYFHCMTCNCCLGMKLVNHKCLEKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLVAEELPEEYRDRCQDILCNDCGRKGASRFHWLYHKCGFCGSYNTRVIKTEATNSDCPASNQ* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0318 1234 CDD Hr-like 39 165 - -
Vvi17g0318 1234 Pfam Ring finger domain 1113 1155 IPR001841 -
Vvi17g0318 1234 SUPERFAMILY RING/U-box 1113 1159 - -
Vvi17g0318 1234 Gene3D nmb1532 protein domain like 298 446 - -
Vvi17g0318 1234 Gene3D nmb1532 protein domain like 34 184 - -
Vvi17g0318 1234 ProSiteProfiles Zinc finger CHY-type profile. 978 1047 IPR008913 GO:0008270
Vvi17g0318 1234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1226 - -
Vvi17g0318 1234 ProSiteProfiles Zinc finger RING-type profile. 1114 1156 IPR001841 -
Vvi17g0318 1234 Pfam Zinc-ribbon 1161 1218 IPR039512 -
Vvi17g0318 1234 CDD RING-H2_Pirh2-like 1113 1156 - -
Vvi17g0318 1234 ProSiteProfiles Zinc finger CTCHY-type profile. 1050 1113 IPR017921 -
Vvi17g0318 1234 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Vvi17g0318 1234 Pfam Hemerythrin HHE cation binding domain 645 801 IPR012312 -
Vvi17g0318 1234 Pfam Hemerythrin HHE cation binding domain 44 167 IPR012312 -
Vvi17g0318 1234 CDD Hr-like 647 800 - -
Vvi17g0318 1234 CDD Hr-like 300 428 - -
Vvi17g0318 1234 SUPERFAMILY Zinc hairpin stack 1051 1107 IPR037275 -
Vvi17g0318 1234 SMART ring_2 1114 1155 IPR001841 -
Vvi17g0318 1234 FunFam Zinc finger protein-related isoform 1 1109 1158 - -
Vvi17g0318 1234 Pfam CHY zinc finger 985 1060 IPR008913 GO:0008270
Vvi17g0318 1234 Coils Coil 305 325 - -
Vvi17g0318 1234 Gene3D nmb1532 protein domain like 642 873 - -
Vvi17g0318 1234 SUPERFAMILY CHY zinc finger-like 977 1041 IPR037274 GO:0008270
Vvi17g0318 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1108 1158 IPR013083 -
Vvi17g0318 1234 Gene3D - 1185 1228 - -
Vvi17g0318 1234 FunFam Zinc finger protein BRUTUS 640 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0318 Vvi-Chr17 3316558 3333287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0318 24 1233 C2H2 Transcription Factor Family AT3G18290 68.966 0.0 1718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0318 K16276 - vvi:100254283 2506.86