LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0311	ATGGCAGCTAAACGGCTTTTTGATGAAATGGAACCTGACGCGGATCAACGGAGGATCGGCAGATCGATTAGAACTAGGCCGTTTTTTGCTTCTATAATTGGAGAGACTTTTAGGGGGAATTCCTGGCAGAACATCTGTACGGCCTTGGAACCAATGCTTAGAAGAGTGGTGAATGAAGAGGTGGAACGTGGGTTAGTACGTGGTGCTCGCTCTTTGACTTGGTCTCCATCCTTGAGAATCCATGGGCCAGAACCATCAAACTTGCAGCTGATTTTCAGTAAAAATCTGTCGCTTCCTATATTCACTGGGGCCAAGATTAGAGATGCTGAAAACAACCCACTCCTACTCTGTATAGTGGACAAAAGTGGTGATGAAGCAGTTCAAACAACTCTTCCATATCCTATCCAACTGGACATCGTAGTTCTTGATGGAGACTTTCCTCACGGGGAGCTCACTAACAGTACCTGGTCCATGGAAGAATTTAATAACAGTATTGTGAAGGAGAGAACCGGGAAGCGACCACTGCTTGTTGGAGATGTGCTTGTCACCATGAGGGATGGGTTTGCAGTGGTAGGAGATATTGAGTTTACCGATAACTCGCACTGGATTCGTGGGAGGAAGTTCAGACTTGGTGCAAGAGTTGTTCCGGGCAGCTGCCATGGTGTTAGGATACTTGAAGCCTTTACAGAACCCTTTGCTGTTAGAGATCACCGTGGGGAGTTGTACAGAAAACACCATCCACCTATGCTGAATGACGATGTTTGGCGTCTAGAAAATATTAGTAAAGATGGAGCTTTCCACAAGAGGCTAGCCTTCAAGCATATTAACACGGTGCAAGAGTTCTTGAAGCTGTTCATTGTTGATCCAGCCAAACTTAGACGCATATTAGGTGCTGGGATGTCAGACAAGAAGTGGGAAGCAGTAATAAAGCATGCAAGCACATGCTTAATGGGTAACAAAGTGCATATTTTCCATGGACCACACTATACTGTAACCTTGAATCCAATATGTCAGCTCGTCAGAGCTGTGATCAATGGGCAGATTTATGCTAATAATCAAGAACTATCCAGTATTAACCAGGCCTATGTAAAGAGTTTGGTTAGAGAAGCATATATAAATTGGAATTCTTTAGAAGAGGTTGATGAACTTTTGAGTGAGACTGCCCTACTAACACAAGGTGATCCACGGGAGCAGTGTCCCAATCACCATCAGACCATGGAAAGACCTTTTCAGCAACTTGGGTACCTCCCAGATAAAGCTACGGACATCATTTATTCAGATGTGGGGAGCAGCAATTGGCCAACAAATCCTACTTATCATGGCACACTGATTGATAGTGGCATCGGCTATTACATCATGGACTCAACGGTGGATGGTGATTTAGAACCTTCTAAGCATTTCCCATGTTGA	1410	0.4447	MAAKRLFDEMEPDADQRRIGRSIRTRPFFASIIGETFRGNSWQNICTALEPMLRRVVNEEVERGLVRGARSLTWSPSLRIHGPEPSNLQLIFSKNLSLPIFTGAKIRDAENNPLLLCIVDKSGDEAVQTTLPYPIQLDIVVLDGDFPHGELTNSTWSMEEFNNSIVKERTGKRPLLVGDVLVTMRDGFAVVGDIEFTDNSHWIRGRKFRLGARVVPGSCHGVRILEAFTEPFAVRDHRGELYRKHHPPMLNDDVWRLENISKDGAFHKRLAFKHINTVQEFLKLFIVDPAKLRRILGAGMSDKKWEAVIKHASTCLMGNKVHIFHGPHYTVTLNPICQLVRAVINGQIYANNQELSSINQAYVKSLVREAYINWNSLEEVDELLSETALLTQGDPREQCPNHHQTMERPFQQLGYLPDKATDIIYSDVGSSNWPTNPTYHGTLIDSGIGYYIMDSTVDGDLEPSKHFPC*	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0311	469	Pfam	Calmodulin binding protein central domain	249	315	IPR046830	-
	Vvi17g0311	469	PANTHER	OS02G0177800 PROTEIN	4	411	IPR012416	GO:0005516
	Vvi17g0311	469	Pfam	Calmodulin binding protein-like N-terminal domain	88	237	IPR046831	-
	Vvi17g0311	469	Pfam	Calmodulin binding protein C-terminal domain	320	380	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0311	Vvi-Chr17	3257049	3260182	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0311	3	381	Calmodulin-binding Proteins	AT5G57580	46.632	2.67e-113	346

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0311	-		-	vvi:100264668	964.526