LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0310	ATGGCTGCCAAACGATTATTGAATGATTTTGGATCCGACCCGGATCAACCGACTGAGAAACGGACTAGAACTAGACCTTTTTTCACTTCTGTAATTGGAGAAGTTCTTATGGGGAATTCATTTCAGAACATCTGTACGGCCTTGGAACCAATGCTTAGACGAGTGGTAAACGAAGAGGTGGAGCGTGGAATACGCAGTTCATGCACTTTCACTAGGTCTCCCTCCTTGCGAATTCAAGCCCTGGAAGCATCAAACTTGCAACTGATCTTCACTAAGAGGCTCTCGCTTCCAATATTCACGGGGACCAAGATAGGATACGCCGAAAACAGCCCACTTCAGCTCCATATCGTGGAAACAAGTGGTGATCAAATGGTTCCAACAACTCTACCTTATTCTATCAAAGTAGAGATCGTGGTTCTTGACGGCGACTTCCCCCAAGGGGACTGCAACACCTGGTCCAGCAAAGAATTCGAAGACAATATCGTGAGGGAGAGAACCGGCAAGCGACCACTGCTAGCTGGAGACGTGATTGTCACCATGAGGGATGGATTAGCAATGATTGGAGACATCGAATTCACCGATAATTCTAGCTGGATACGAAGCAGGAAGTTCAGGCTCGGTGCAAGAGTTGTCCCGGGTAGCCGCCATGATGTTAGTATCCGTGAAGCCATTACAGAAGCTTTTGCTGTTAAAGACCACCGTGGAGAATTATACAAGAAGCACCATCCACCCATGTTAAACGATGAGGTATGGCGCCTTGAGAAGATCGGAAAAGATGGGGCTTTCCACAAGAAGCTGGCCTCCGAGAACATCAACACAGTACAGGACCTTTTGAAGCTGTCCATTGTCGATCCACAAAAACTTAGAACGATATTAGGCCCCGGGATGTCAGAGAAAATGTGGGAAGTAGTGATTAAGCATGCCAGGAATTGCGATTTGGGGAAAAACTTGTATATTCTACGCGGATATAATTTCACCGTTACCTTGAATGCCATATGTCAAATTGTGATGATGGATATTAATGGACAGATTTATGCTCGGCAAGAACTATCAAATCTTGACAGGACCTACGTTGAGAAATTTGTTATTCAAGCATATTCAAATTGGAATTCATTAGAAGAGGTCGATGGAAGTTTGAATGAGACTGCCCTACTAACACGAGGTGAGCTGGGTGAGCAGCATCCCAATCTTCAGGAGACCATGGCAAGAGCACCACTGCAGCCACATGGATGCTACCTTACTGATAAAAGTAGTATGGAGGTCGGGAATGCAGATGTAGGAAGCAGCAATTGGCAGATGAATGCTGCATATCAAGGCACACCAGTTGACACTGGCGTCCGTTATTACCTTACAGAGTCCTCATCAGGCTGCAATATAACACCTCCTTCAAGGACTTTTAATGGGAGCTGA	1410	0.4574	MAAKRLLNDFGSDPDQPTEKRTRTRPFFTSVIGEVLMGNSFQNICTALEPMLRRVVNEEVERGIRSSCTFTRSPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIVETSGDQMVPTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGMSEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLDRTYVEKFVIQAYSNWNSLEEVDGSLNETALLTRGELGEQHPNLQETMARAPLQPHGCYLTDKSSMEVGNADVGSSNWQMNAAYQGTPVDTGVRYYLTESSSGCNITPPSRTFNGS*	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0310	469	PANTHER	OS02G0177800 PROTEIN	3	421	IPR012416	GO:0005516
	Vvi17g0310	469	Pfam	Calmodulin binding protein-like N-terminal domain	86	233	IPR046831	-
	Vvi17g0310	469	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vvi17g0310	469	Pfam	Calmodulin binding protein central domain	245	311	IPR046830	-
	Vvi17g0310	469	Pfam	Calmodulin binding protein C-terminal domain	317	375	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0310	Vvi-Chr17	3248960	3251712	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0310	3	377	Calmodulin-binding Proteins	AT5G57580	48.698	9.92e-118	357

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0310	-		-	vvi:100259493	945.651