Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0307 ATGCTTTTTCTCCATGAGTTCTGCCAAATGGGTTCCAAGCTTTTTCAATCATTCATCCTACACTCCCCCATCACCACCTTCTTCTTCATCTTCATCGCTATTCCTATGTGCTTCTGCGTTGATAACCAACAATATGAGGAGTGCACAAGTAGTCTGTACGAGTGCGGCGACATGAAAGGCATAGGGTATCCTTTCTGGGGAGATGGTCGACCTAAATTCTGTGGGCAACAAGGGTTCGAGCTCAAGTGCCAGAATGATGATTACCCTCTTATAGATATTGGTTCTTTGGAATTCCGAGTACTCAATATCAGTAATTCCACTTATGCTATGAGAATAGCCCGAAAGGATTTCTGGGATCAAACTTGTCCTAAAGAATTCCAATCCACGACTCTCAATTATACGTTGTTTGATTATGCTGGTACCGATCGAAACCTCACCTTATTTTACGGTTGCCCCGATGACGTGTTGTCCCAACTCCCGGCTACCTGGAATATTAGTAATAATTTTACATGCTCAGTTGAAGATATAAATGATACCACTGCTTTCTACGCGGATGAAGCGTTTCTGGGGCTTGATCAGCACCTTGCAATCCTAAGGACTTGCAAAATCAACGTCACGCTTCCCGTTCTAGGAGCCGCTATTGATGAACTCAATGCCAATAGGACAGGGGGCGAATTTAGTAACGGAGAGAGACTGGAAAAGGCTATGAATATGGGATTTGATGTGGATTATAGCGTAGTCAGAGGGTTGTGTGTGCACTGTAATACGACCGGTGGAATATGCGGATCATCCAGCACGTCTTCATTTAGCTGCCTTTGCCGTGATAAATCTTATCCATATTCGTGTCAAAAATCAGAGGGACTAAACTATCACAGGAAGGTTATTATAGGTGTTTGTGCTGGATTAGGTACTCTCCTTATTTCAAGCATTTTTTTCCTCATGTATCTACGCCGCTACAAGAAGCGCTATCCTCCACCTTTGTTCTCTCGAAATATCTCTTCTGATCCCTCTTCGAAGACAATTTTTGAGAGCCAGGGCAGCTTACACGGAGTCCATATATTCACTTACGAAGAACTTGAAGAAGCCACTAACAATTTTGATTCCAGCAAAGAACTAGGAGATGGAGGCTTTGGCACCGTATATCATGGCAAACTCCGTGATGGTCGTGTTGTTGCTGTGAAGCGCTTATATGAAAACAATTACAAGAGGGTTGAGCAGTTCATGAATGAAGTTGAGATCCTCCAACTTTTGCGCCACCGAAACCTAGTCTCCCTATATGGGTGCACCTCTCGCCACAGCAGAGAGCTCCTCCTTGTATATGAATACGTTCCTAACGGTACTGTTGCTGATCATCTTCACGGTGAACAAGCTAAACCTGGATCACTCACATGGCCAACTCGAATGAAAATTGCCATAGAGACTGCAAGTGCATTGAAATATCTCCATGCTTCTGATATCATCCACCGTGATGTCAAAACCAACAATATTCTCCTTGACAGCAACTTCTCTGTGAAAGTTGCAGATTTTGGGCTGTCCCGTCTCTTCCCGACAGATGTTACCCATGTTTCAACTGCTCCACAAGGAACTCCTGGATATGTTGATCCCGATTATCACCAATGCTACCAGCTTACAAGCAAGAGTGACGTCTATAGCTTTGGGGTGGTCCTGATTGAGCTTATATCATCCATGCCTGCTGTTGATATCACTAGGCACCGGCATGAGATTAACTTGTCTAACATGGCTATCAACAAGATCCAAAACCATGCATTGCATGAACTTGTTGACCGTTCCCTTGGGTTTGATTCAGACCAGAACATAAGGAGGATGATAATGGCAGTGGCAGAGTTGGCATTTCAGTGTTTGCAAAATGAGAAGGAAATGAGACCTGCTATGGATGAAGTGCTTGAGGTTCTAATGGGCATTGAGAGTGAGGGTTGCAATATAGTAAAGACAGAGGAGGTGGAGATTCCAGCAGACAGTGTTGGGTTGTTGAAGAGTAAGCAACCACCAGCTTCACCGGATTCTGTGACTACAAATTGGACTAGTTGGCCCTCAACTACTAATGGCAGCAGCTGA 2076 0.4422 MLFLHEFCQMGSKLFQSFILHSPITTFFFIFIAIPMCFCVDNQQYEECTSSLYECGDMKGIGYPFWGDGRPKFCGQQGFELKCQNDDYPLIDIGSLEFRVLNISNSTYAMRIARKDFWDQTCPKEFQSTTLNYTLFDYAGTDRNLTLFYGCPDDVLSQLPATWNISNNFTCSVEDINDTTAFYADEAFLGLDQHLAILRTCKINVTLPVLGAAIDELNANRTGGEFSNGERLEKAMNMGFDVDYSVVRGLCVHCNTTGGICGSSSTSSFSCLCRDKSYPYSCQKSEGLNYHRKVIIGVCAGLGTLLISSIFFLMYLRRYKKRYPPPLFSRNISSDPSSKTIFESQGSLHGVHIFTYEELEEATNNFDSSKELGDGGFGTVYHGKLRDGRVVAVKRLYENNYKRVEQFMNEVEILQLLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGEQAKPGSLTWPTRMKIAIETASALKYLHASDIIHRDVKTNNILLDSNFSVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPDYHQCYQLTSKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNMAINKIQNHALHELVDRSLGFDSDQNIRRMIMAVAELAFQCLQNEKEMRPAMDEVLEVLMGIESEGCNIVKTEEVEIPADSVGLLKSKQPPASPDSVTTNWTSWPSTTNGSS* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0307 691 Pfam Protein tyrosine and serine/threonine kinase 369 637 IPR001245 GO:0004672|GO:0006468
Vvi17g0307 691 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 686 IPR044652 GO:0004672
Vvi17g0307 691 ProSiteProfiles Protein kinase domain profile. 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0307 691 Gene3D Phosphorylase Kinase; domain 1 338 442 - -
Vvi17g0307 691 SUPERFAMILY Protein kinase-like (PK-like) 342 639 IPR011009 -
Vvi17g0307 691 Pfam Wall-associated receptor kinase C-terminal 183 276 IPR032872 -
Vvi17g0307 691 Pfam Wall-associated receptor kinase galacturonan-binding 48 114 IPR025287 GO:0030247
Vvi17g0307 691 MobiDBLite consensus disorder prediction 661 691 - -
Vvi17g0307 691 MobiDBLite consensus disorder prediction 670 691 - -
Vvi17g0307 691 Gene3D Transferase(Phosphotransferase) domain 1 443 650 - -
Vvi17g0307 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vvi17g0307 691 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 338 442 - -
Vvi17g0307 691 SMART serkin_6 366 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0307 691 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Vvi17g0307 691 FunFam Wall-associated receptor kinase-like 20 443 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0307 Vvi-Chr17 3220947 3228185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0307 249 691 Receptor kinase-like Gene Family AT1G25390 56.264 3.97e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi17g0307 PK_Tyr_Ser-Thr 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0307 - - vvi:100266453 865.529