Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0306 ATGCATCTCAAAGATTTCTTCCCTTCTTCCCTTGTCATCTCCCTCTTCATCTCCATCCTCTCCCATGCCTTCCCGAAATATGTCTGCGGAATCGATTTTCGCTATGCAACCTGCAATTCTTCAGTAGAATGTGGTAGACTGGGAAAAATTCACTACCCTTTCTGGGTAAACGGCTCCCAACCTTGGTATTGTGGTCATCCCTGGTTCGGTCTGTTCTGTCACAAAGACGAGGCCACCATGTTGATCTGGCCTGAACTTTTTCATGTCATCGACATGGATAATAGGACTCAAACCCTGAAGATTGCCAGAATCTATGAGCCCTCAACGGGGAATTTTTTTTGTCCGATCTTCAACGCAAGCATAAAGTCAACTTCCTTCAGCTATTCTTCCGATGTTGAATTTATCACTTTCTTGCACAATTGTCCTCCGATCGAAGTTTTATCATCTTATGAGTATCCTTGTGTGGTAGTAAACAAGAAGCAAATCCACAGTTACTTTGTGGCAAATACATCTTTGGCAAATAGATTCAGAAGCAGATGTGGGTATAGTGCTCTTCTTCCTGTTCTCGGAAGTGCTGTAGAAGGCCTTATGAATGGTTCATTAGATGTGGAAAAGGCTTTGAGCAAAGGGTTTGAGGTCAAATGGACAGCAAACGAGTCACAGTGCGAAGGGTGCATGGAGTCTGGCGGTAGGTGTGGGTATGACAGGAATTTGAACACGCCTTCTTGTTTTTGTCGTGACCGGCCTTATCCAGAAAGCTGTTCACGTTCATCAAAGTCTGCAAACATTCCAAAGACAATCATGATGGCCGTTGTTGCAGCAGGAGTTGGGACATTATTCGCCAGCATTCTTATAATCTTTTGCTTCAAAAGAAAAATATCAAAACATAGACTAATGTTCATTTGGAGAAAGAGATCTGATGCTGATCAAAACATTGAAGAATTTGTTAGGAATTATGGATCTCAAGCTCCTAAGAGGTATAGTTATTCAAATGTTAAGAAAATGACTAATGCATTCAAGGATAAATTAGGCCAAGGAGGCTATGGAGGTGTTTACAAAGGAAAGTTAGGTGATGGTCATCTTGTCGCAGTCAAAGTCCTCAACACGTCCAAAGGAAATGGAGATGAATTCATTAATGAAGTTGCAAGCATTAGTCGGACTTCTCATGTCAATATTGTCAGACTTTTGGGCTTTTGTTTTGAGGGTGGCAAAAAAGCTCTTATATATGAATTTATGAGCAATGGGTCTCTTGAAAACTTCTTAGGCAGTGAAAATCCTTTGAAAGTCAGTAAACACTTGGGATGGGAGAAGTTGTATCAAATTGCAGTTGGGATAGCAAGAGGACTTGAATACTTGCATTGTGGCTGCAGAACAAAGATATTGCATTTTGATGTGAAACCACACAACATCCTTCTAGACCAAGACTTTTCCCCCAAAATCTCTGATTTTGGGCTTGCTAAATTATGCCCACCAAAAGAGAGTATTATATCAATGTCAGCAGCTAGAGGAACTATTGGGTATGTTGCTCCAGAAGTGTTCTGTAGAAATTTTGGCCAAGTCTCACACAAATCCGACGTCTATAGCTATGGAATGATGGTTCTAGAAATGGTTGGAGGAAGACAAAACGTCAATGGCACAGTGGGTCACACCAGCGAGACATATTTTCCGCATTGGATTTATAAGCATCTTGAGCAGCAAGAAGATCTGGGACTAGAAGGCATTGAGAACAAAGAGGAAAATGAAATTACAAGGAAGATGATAGTTGTGGGTTTATGGTGCATACAAACAAATCCATCACACAGGCCATGCATGAGTAAGGTGATTGAAATGTTGGAAGGAAGCATAGAAGCCTTACAGATCCCACCAAAGCCTTTCTTATCTTCTCCTCCAAGGTTTCCGATAGATTCTTCATCCTTCAAATCAACACTATCACAATAA 1938 0.4107 MHLKDFFPSSLVISLFISILSHAFPKYVCGIDFRYATCNSSVECGRLGKIHYPFWVNGSQPWYCGHPWFGLFCHKDEATMLIWPELFHVIDMDNRTQTLKIARIYEPSTGNFFCPIFNASIKSTSFSYSSDVEFITFLHNCPPIEVLSSYEYPCVVVNKKQIHSYFVANTSLANRFRSRCGYSALLPVLGSAVEGLMNGSLDVEKALSKGFEVKWTANESQCEGCMESGGRCGYDRNLNTPSCFCRDRPYPESCSRSSKSANIPKTIMMAVVAAGVGTLFASILIIFCFKRKISKHRLMFIWRKRSDADQNIEEFVRNYGSQAPKRYSYSNVKKMTNAFKDKLGQGGYGGVYKGKLGDGHLVAVKVLNTSKGNGDEFINEVASISRTSHVNIVRLLGFCFEGGKKALIYEFMSNGSLENFLGSENPLKVSKHLGWEKLYQIAVGIARGLEYLHCGCRTKILHFDVKPHNILLDQDFSPKISDFGLAKLCPPKESIISMSAARGTIGYVAPEVFCRNFGQVSHKSDVYSYGMMVLEMVGGRQNVNGTVGHTSETYFPHWIYKHLEQQEDLGLEGIENKEENEITRKMIVVGLWCIQTNPSHRPCMSKVIEMLEGSIEALQIPPKPFLSSPPRFPIDSSSFKSTLSQ* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0306 645 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Vvi17g0306 645 SMART serkin_6 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0306 645 Pfam Wall-associated receptor kinase C-terminal 169 247 IPR032872 -
Vvi17g0306 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 628 IPR045874 GO:0004672
Vvi17g0306 645 MobiDBLite consensus disorder prediction 626 645 - -
Vvi17g0306 645 Gene3D Phosphorylase Kinase; domain 1 309 411 - -
Vvi17g0306 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vvi17g0306 645 ProSiteProfiles Protein kinase domain profile. 337 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0306 645 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0306 645 Pfam Wall-associated receptor kinase galacturonan-binding 38 103 IPR025287 GO:0030247
Vvi17g0306 645 MobiDBLite consensus disorder prediction 631 645 - -
Vvi17g0306 645 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Vvi17g0306 645 FunFam serine/threonine-protein kinase PBS1-like 304 411 - -
Vvi17g0306 645 SUPERFAMILY Protein kinase-like (PK-like) 316 612 IPR011009 -
Vvi17g0306 645 FunFam PR5-like receptor kinase 412 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0306 Vvi-Chr17 3212628 3219814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0306 23 624 Receptor kinase-like Gene Family AT5G38260 41.961 5.24e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi17g0306 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0306 - - vvi:100261246 1309.28