Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0294 ATGCCTGTTGTTGCAGAGGGCTCAACAGTGGCAGAGCACATTAGATTGAGGAGACCCAGAAGCCAACCCATCCCAGACACAGATCCAAACCCACAAATTCCTTCTATAATTCAATCTACTCGTTGCAAATCCTCTATTTCTTCTCTGCTTTTGTCAACATTCTCCAACACCAACGCCAACACCAATGAGGGCAGCAATAACACTAGTGGTGGTAGGAAGAAGAACTTCGCATCTGCCAAGTTCAGGGGGCTGGGCTGTGCGGCGTCGTCTCAGGTGTCGGTGCCGGCGGTGATACGGACGTCGGCAGATTGGCAGGCGAAGAAGGTGAGGAAGAAGAAGCAGAGGAGTTTGCAGCAGCAGCAGCAGCAGCAGAAGAAGAGCGGCAACAAGGGGGTGAATGCGGTGGCGCCAAACCCACCTGCGGCTTCTGTTGAGTGCGTTGTTCCTGATGTTTGGTGCGCTCCTGGAATTGGGTTCTCTGCGGATGCTGCGTCTGTTGACTGTGTTGTAGCCAGAAGGCCTGCTTCGGGAAGAGGGAAAGTTGATGGAGACAAGATCAACCAGAGGGAGCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTCATGATTCTGACCCTACCATTGGAATGATGCGCCCAGGATCAGATGTGTTTGGGCCTAGATATTACCGTCATGTTCGACATCGCTCACCTGAAGGGCTTGCAGAGATTGTGTTGTTTGAAAGCAACTTCTTGATGGGAGGAAGATCAAATGGACATGACCGATACAGGGACTGGAGACTAGATGTTGACAACATGTCATATGAGGAACTGCTTGAGCTTGGTGATCGAATCGGGTATGTGAGTACAGGACTGCAAGAAGATGAGATTGGTCGCTGCCTCAGGAAAAGCAAACTCTCAATTTTGGATGAATTGTCAGCACACTTACCTACAGAATTGGATTGGAAGTGTAGCATTTGTCAGGAGGAATATGAAGCAGATGATGAGATGGGAAAGCTGGAGTGCGGGCACGGCTATCACATAGACTGCATAAAGCAATGGCTGGGGCAGAAAAATAGTTGCCCTGTCTGCAAGGCTACAGCAGCTGCCCAATGCTAA 1116 0.5018 MPVVAEGSTVAEHIRLRRPRSQPIPDTDPNPQIPSIIQSTRCKSSISSLLLSTFSNTNANTNEGSNNTSGGRKKNFASAKFRGLGCAASSQVSVPAVIRTSADWQAKKVRKKKQRSLQQQQQQQKKSGNKGVNAVAPNPPAASVECVVPDVWCAPGIGFSADAASVDCVVARRPASGRGKVDGDKINQRERASCPTRRATNSEHISFHDSDPTIGMMRPGSDVFGPRYYRHVRHRSPEGLAEIVLFESNFLMGGRSNGHDRYRDWRLDVDNMSYEELLELGDRIGYVSTGLQEDEIGRCLRKSKLSILDELSAHLPTELDWKCSICQEEYEADDEMGKLECGHGYHIDCIKQWLGQKNSCPVCKATAAAQC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0294 371 Pfam Ring finger domain 322 364 IPR001841 -
Vvi17g0294 371 SUPERFAMILY RING/U-box 322 367 - -
Vvi17g0294 371 SMART ring_2 323 363 IPR001841 -
Vvi17g0294 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 370 IPR013083 -
Vvi17g0294 371 MobiDBLite consensus disorder prediction 116 131 - -
Vvi17g0294 371 MobiDBLite consensus disorder prediction 110 136 - -
Vvi17g0294 371 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Vvi17g0294 371 MobiDBLite consensus disorder prediction 1 35 - -
Vvi17g0294 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 368 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0294 Vvi-Chr17 3094361 3100262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0294 1 275 C3H Transcription Factor Family AT1G73760 38.796 2.09e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0294 - - vvi:100245764 674.085