Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0291 ATGGATCCATCACCACCGCCTCTTCCTCCCCATCCCATCACCACTATGCAGCTCAACTATCCCGAATCCGCAGACTCTTCTCCCAGGAAGGCGGATACCTGGGAAGAGCCTCTCCCGCCGGTCCCAGGTGCCAGACTCCGTCTTATGTGCAGCTTCGGCGGCCACATTATCCCCCGCCCACATGACAAGACTCTCTGCTATATGGGCGGTGAGACCCGCATGATCGTGGTCGACCGCAGCTCTTCCTTGGCTGACCTTTCCTCTCGCATCTCCCGGACTCTACTCAATGGCCGCGGTTTTACCCTCAAGTACCAACTCCCCAATGAGGACCTGGACAATCTCATTTCAGTCACGACCAATGAAGATCTTGATAACATGATAGAAGAGTATGATAGAATCACGTCAGCTTCCCCTTTGAAATCCTCTCGCCTCCGGCTATTTATCTTCCTTGCGAAGCCTGAAACTGCCGCTTCTATGGGGTCTCTACTTGATGATGCCAAGTCTGAGACTTGGTTTGTTGATGCACTCAATGGCGCTGGGCTGCTTCCCAGAGGACTTTCTGATTCTGCGGCCATTGATTGCTTTCTTGATAGAGATGCTAGTGGCGATTCTTGTACACATGTGGAGGCGCAAACCGACTCTTTATGCAACACCAAGCATGGGAAGAGTGGGCAGGAGGTGCACTCGGTGCCTAGCTCACCTATGGTAGAGACTGCTTCGTCCTTTGGCTCATCTTCATCTTCGCCCTCCATGGCCAACCTGCCGCCTATTCGGGTGCGGGCTGAGGACGGTGGGCTTAGACTGCATGATCACAAGGTTGGTTTGGAGGAGGAGTTTGCATATATGAGTACTAATCCTCAGACTGTGGTGCAGAAACAAGATGAGGGGTTTGTTGTGTTGTCTGCTCCGCCCCCACTTCCCAGTTCTGCTATTGTTGGTGGAACTGCGGCTGCAGCTGCTGCAGAATCTGGTGAGAACCAGAGCCGAGGTTTCTCCGATGATGAGAGATCCGATCAAGGGGTGAGGATTCGCTTCAGAAAACCTCCATTGCCACTGCAGCCAGTGCAACGAAGGCTCGATGATGGTTTCAATTTGCCTTCCCCAGATTCGAAACATGGTGGGGGATTAAATTTTCCATCCCCAGATTCAGTAGCAAGTGATAGTAGCATTGCGTCTGCAACATCTTTCTCAAAATCCATAGCCTATCTAGACCCGGTTCATGTCACAACCAAAGACAACAAGCCTCCTATTCCAATTGATCCGAAGAAGGATACTCCAGACATGAGCTCTCAAATCCAGCTGCAACAAGTTCAGGATTCCAGCTACATATTGCCTTCACAAGCCGCGGATCTGCAGCAGCAGCAACCAGTAGTCCACGCCAGCATGCATTACATCCACCACCCACCAACAGGTTCTGCAGTGCCAATCTCATCATACTACCCAATGTATGCTCCAACACCACAAAATCAGCAGCAGCTTCATCACCAGATGGATCAGCAATATCCTGTCTACTTGTTGCCCATCACACAGCCACAAACTTACAACTTGCCATTGCAGTCCAATGTTGCAACTGACTCTACTGCTGTAGCACCCGGCCGGGCACTCACACCTCCGACTCCGGCCATGGTCACACCTTCCGGGCTTTACAAAGAAATAAGTACTCCACCAATCTACCCCACGAAACCAGAAATGGCTGCAAGTGTGTATAGAACAGTTGGCACTGCAACTCCACCTCTCGTCCAAGTTCCTTCCAATCAATTTCATCAGCAACAACAGTATGTGGGGTTCAGTCAGTTGCATCACCCACCACAGTCCATTGCTGCTGCCGCTCCTAATTATGCCTTTGAATACGCCCATCCTGCACAAGACCAGGCATACTACACTCACCATTCAGTTGCTCCATTGCCTCCCCAGTACCAAACGTTGACCTCAACCGCAGCAGTGGCATTATCCGAAGCCTCAGCACAGTTGCCGATAGACAACACCATGCAGCAGATCAGAACCTCACAAAACCACCATGACTGA 2025 0.5126 MDPSPPPLPPHPITTMQLNYPESADSSPRKADTWEEPLPPVPGARLRLMCSFGGHIIPRPHDKTLCYMGGETRMIVVDRSSSLADLSSRISRTLLNGRGFTLKYQLPNEDLDNLISVTTNEDLDNMIEEYDRITSASPLKSSRLRLFIFLAKPETAASMGSLLDDAKSETWFVDALNGAGLLPRGLSDSAAIDCFLDRDASGDSCTHVEAQTDSLCNTKHGKSGQEVHSVPSSPMVETASSFGSSSSSPSMANLPPIRVRAEDGGLRLHDHKVGLEEEFAYMSTNPQTVVQKQDEGFVVLSAPPPLPSSAIVGGTAAAAAAESGENQSRGFSDDERSDQGVRIRFRKPPLPLQPVQRRLDDGFNLPSPDSKHGGGLNFPSPDSVASDSSIASATSFSKSIAYLDPVHVTTKDNKPPIPIDPKKDTPDMSSQIQLQQVQDSSYILPSQAADLQQQQPVVHASMHYIHHPPTGSAVPISSYYPMYAPTPQNQQQLHHQMDQQYPVYLLPITQPQTYNLPLQSNVATDSTAVAPGRALTPPTPAMVTPSGLYKEISTPPIYPTKPEMAASVYRTVGTATPPLVQVPSNQFHQQQQYVGFSQLHHPPQSIAAAAPNYAFEYAHPAQDQAYYTHHSVAPLPPQYQTLTSTAAVALSEASAQLPIDNTMQQIRTSQNHHD* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0291 674 MobiDBLite consensus disorder prediction 407 428 - -
Vvi17g0291 674 CDD PB1_UP2 49 149 - -
Vvi17g0291 674 MobiDBLite consensus disorder prediction 1 38 - -
Vvi17g0291 674 MobiDBLite consensus disorder prediction 217 255 - -
Vvi17g0291 674 Pfam PB1 domain 63 149 IPR000270 GO:0005515
Vvi17g0291 674 PANTHER OS05G0427100 PROTEIN-RELATED 20 528 - -
Vvi17g0291 674 SUPERFAMILY CAD & PB1 domains 61 160 - -
Vvi17g0291 674 Gene3D - 63 150 - -
Vvi17g0291 674 MobiDBLite consensus disorder prediction 317 388 - -
Vvi17g0291 674 MobiDBLite consensus disorder prediction 328 343 - -
Vvi17g0291 674 SMART PB1_new 60 151 IPR000270 GO:0005515
Vvi17g0291 674 MobiDBLite consensus disorder prediction 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0291 Vvi-Chr17 3071407 3073774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0291 44 178 MAP Kinase Kinase Kinase AT1G79570 41.481 6.52e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0291 - - vvi:100264517 1266.52