Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0283 ATGGCTGATGAACCCAGATCGACCTCATTGAATGAGAACACAAATGTTGTACCTGATAGTTGCAAGCGGGGAGGTGATTTTGAGGACGCGGACTCCGTATTGGTTGTCAAGAAGTTAAAAACTGAGGCATTGAGTGTGGAAAATGCGAGGGAAGTAGGGAAAAGGCATTTAGATGTGGCAAGTTGTCAAGAATACTGCAAACCAGAAGTTTCTAATCAAGGAAACAATGACAGTCAGGTGTGTGAGCAGAATGGTTGTTCGCAGGAGAAGCAAAGTGCGAGGAAAGAGCATTTTGAGATTGAAGCGGATGCTGCAGAAGATAAGGGTTCTAGGCACAGCATGGAGGATGCATGGGTTGTGCTTCCTGATGCAAGCTTGGAATTTCCAGGGAAATTGAGATGCGCACATTTTGCAATCTATGATGGACATGGTGGTAGGTTAGCTGCTCAGTATGCCCAGAAGCATTTACATGCAAATGTTCTTTCGGCAGGCTTACCACGTGAGTTGTTGGATGTTAAAGCTGCCAAAAAGGCCATACTAGATGGTTTTCGAAGAACTGATGAGAGTCTTCTTCAAGAAAGTTTGGCAGGGGGATGGCAGGATGGTTCAACAGCTGTATGTGTTTGGATATTAGGACAAAAGGTTTTTGTTGCCAACATTGGAGATGCAAAAGCAGTTGTAGCACGATCATCTACCACCGATGGATCAGAGAATCAGTCAGATGGAGTAAGTCAATTAAAGGCCATTGTTTTGACAAGGGAACACAAAGCCATTTATCCACAAGAACGTGCTCGCATTCAGAAGGCTGGTGGGTCTGTGAGTTCAAATGGACGATTGCAGGGACGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGGTGGGCGTTGTTGCTACTCCAGATGTTCATTCCTTTGACCTCACAGAAAGAGAACACTTCATTATTCTTGGCTGTGATGGCCTGTGGGGGGTTTTTGGACCTAGTGATGCTGTTGATTTTGTTCATAAAATGTTGAAGGAGGGCCTACCTGTTGCAACTGTGAGTCGCCGTCTTGTAAGGGAAGCTGTCCGTGAGCGGCGCTGCAAGGATAACTGTACTGCAATTGTCATTGTTTTCAGGCCCAAGTAG 1137 0.4565 MADEPRSTSLNENTNVVPDSCKRGGDFEDADSVLVVKKLKTEALSVENAREVGKRHLDVASCQEYCKPEVSNQGNNDSQVCEQNGCSQEKQSARKEHFEIEADAAEDKGSRHSMEDAWVVLPDASLEFPGKLRCAHFAIYDGHGGRLAAQYAQKHLHANVLSAGLPRELLDVKAAKKAILDGFRRTDESLLQESLAGGWQDGSTAVCVWILGQKVFVANIGDAKAVVARSSTTDGSENQSDGVSQLKAIVLTREHKAIYPQERARIQKAGGSVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDVHSFDLTEREHFIILGCDGLWGVFGPSDAVDFVHKMLKEGLPVATVSRRLVREAVRERRCKDNCTAIVIVFRPK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0283 378 Pfam Protein phosphatase 2C 105 363 IPR001932 -
Vvi17g0283 378 SUPERFAMILY PP2C-like 95 376 IPR036457 -
Vvi17g0283 378 FunFam Probable protein phosphatase 2C 67 88 377 - -
Vvi17g0283 378 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g0283 378 SMART PP2C_4 97 373 IPR001932 -
Vvi17g0283 378 Coils Coil 88 108 - -
Vvi17g0283 378 PANTHER PROTEIN PHOSPHATASE 2C 86 373 IPR015655 GO:0004722|GO:0006470
Vvi17g0283 378 MobiDBLite consensus disorder prediction 1 18 - -
Vvi17g0283 378 Gene3D - 83 376 IPR036457 -
Vvi17g0283 378 CDD PP2Cc 105 375 IPR001932 -
Vvi17g0283 378 ProSiteProfiles PPM-type phosphatase domain profile. 101 375 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0283 Vvi-Chr17 2913564 2945356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0283 70 327 PP2C-type Phosphatase Gene Family AT1G18030 73.643 6.35e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0283 K17500 - vvi:100257757 753.051