Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0281 ATGGCTGAATCCTTTGCTTTTGCCATAGCTGACAGAGTTTTGGGGAAGTTGGGCTCTGCCCTCATCCAAGAAGTTGGCCTTGCTTGGGGTGTTAAAACCGAGCTGGAAGAGCTCAACGATACTCTATCCACCATCCGAGCGGTGCTCTTAGATGCAGAGGAGAAGCAAGCCACCAGCCATCAGCTGAGAGATTGGCTGGGAAAGCTCAAAGATGGCTTTTATGATGCTGAAGATATTGTCGATGAATTTGAATATGAGGCCTTACGCCAGAAAGTGGTGGCTAGTGGGAGCTTTAAAACCAAGGTATGCAGTTTCTTTTCAAGTCCAAAGTCACTTGCATTCAATCTTAAGATGGGTCATAGGGTGAAGAAGATAAGAGGGAGATTAGATAAAATTGCAGCTGATAAGTCAAAATTTAATCTCATCGAGGCTGTTGCAAACACGCCTGTTGTGCTAAGCAAGAGGGAGATGACCCACTCCTTTGTCCGAGCTTCCGATGTTATCGGGAGAGACGATGATAAAGAAAATATTGTTGGGCTTTTGATGCAACCTAGCGATACTGAGAATGTTTCTGTAATTCCCATAGTCGGGATTGGGGGGCTAGGCAAGACAACTCTGGCTGGACTTGTGTATAATGATGAGAGAGTAGTGGGGCAATTCTCCACTAAAATGTGGGTTTGTGTGTCAGATGAGTTTGATATTGAAAAGCTGGTAAAGAAAATCCTTAAGGAGATCAGGAAAGGTGATGAAAGTTACAGTGACTCCTCCATGGTGCAGTTGCAGAGTCATCTTAGAAATGCATTAGATGGTGAAAAATTCTTGCTGGTTTTGGATGATGTGTGGAATGCGGATCGTGAGAAGTGGCTTAAGCTGAAAGACTTGCTCGTGGACGGTGCCAATGGAAGCAAAATTCTTGTAACTACACGCAAGAAGTCAACTGCTTCAATCATGGGCACTTTTCCCATGCAAGAAATAAAGGGTCTTTGTCATGACGATTGTTTGTCTTTATTTGTGAAATGCTCATTTAGGGACGGAGAAGATGAGTATCCAAACCTTTTAAAAATTGGGGATCAGATTGTTGAGAAATGTGCAGGGGTTCCCCTTGCTGTGAGAAGTTTAGGGAGTTTACTGTATTCGAAAAGGGATGAATGGGATTGGGTATCCATTAGAGATAGCGAAATATGGGAATTAGAACAAAATGAAGATGGTATTATGGCTGCATTAAGACTGAGCTATTATGATTTGCCTTATCACTTGAAGCAATGCTTTGCTCTTTGTTCAGTATTTGCCAAAGATTTTGAATTTAGTAATGTTGAATTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAACGGATACCAGGAGTATTATATACATTCAAAATGCATGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAACACTAAATTTTCACAAGAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGAGTGGCCCAAAGAAGAGTCTGAAGCTTTAAGATTCTTGGAGAAGCTGAATAATGTTCATACCATTTATTTTCAAATGGAAAATGTGGCCCCTAGAAGCGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGAGATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAATTCTATTGGTAGTCTGAAGCATCTAAGATACTTGAACCTAAGTGGGAATAAGAGAATCAAGAAACTCCCTAATTCCATTTGCAAGCTATACCATTTGCAATTTTTGACACTCTTTGGTTGTTCAGAACTTGAAGAATTACCAAGAGGCATATGGAGTATGATCAGTTTGAGGACGGTATCTATAACAATGAAACAAAGGGATTTATTTGGAAAGGAAAAAGGGTTGAGAAGCTTGAATTCTCTTCAACATTTACAAATTGTTGATTGTCTCAATTTGGAATTTTTGTCTAAAGGAATGGAAAGCCTTATTCAACTTCGAATATTAGTCATTAGCGATTGTCCAAGTTTGGTTTCTTTGTCACATAATATAAAATTCTTGACTGCATTAGAGGTGTTGGTAATTGACAATTGTCAAAAACTTGAATCCATGGATGGGGAAGCAGAAGGGCAAGAAGACATTCAAAGCTTTGGGAGCCTACAAATTTTGTTCTTTGGTGATTTACCACAATTGGAGGCTTTACCGAGGTGGCTTCTTCATGGGCCAACTTCTAACACTTTACATCAATTACATATTTCAAATTGCCCAAGCTTGAGAGCATTGCCAGAAAGTGGGTTGCAAAAGCTCGTATACCTTCAAAAACTTGAGATTGAAGATTGTCCTGAATTGATTGGAAGATGCAAAACTGAAACGGGGGAAGATTGGCAAAAAATCGCTCATATACCTAAAATATATCTTGATGGAGAAAAGATTGCATCGTTAACCAATAATTAG 2547 0.3954 MAESFAFAIADRVLGKLGSALIQEVGLAWGVKTELEELNDTLSTIRAVLLDAEEKQATSHQLRDWLGKLKDGFYDAEDIVDEFEYEALRQKVVASGSFKTKVCSFFSSPKSLAFNLKMGHRVKKIRGRLDKIAADKSKFNLIEAVANTPVVLSKREMTHSFVRASDVIGRDDDKENIVGLLMQPSDTENVSVIPIVGIGGLGKTTLAGLVYNDERVVGQFSTKMWVCVSDEFDIEKLVKKILKEIRKGDESYSDSSMVQLQSHLRNALDGEKFLLVLDDVWNADREKWLKLKDLLVDGANGSKILVTTRKKSTASIMGTFPMQEIKGLCHDDCLSLFVKCSFRDGEDEYPNLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWELEQNEDGIMAALRLSYYDLPYHLKQCFALCSVFAKDFEFSNVELISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQRIPGVLYTFKMHDLVHDLAMFFAQPECLTLNFHKKDIPKRVQHAAFSDTEWPKEESEALRFLEKLNNVHTIYFQMENVAPRSESFVKACILRFKCIRRLDLQDSNFEALPNSIGSLKHLRYLNLSGNKRIKKLPNSICKLYHLQFLTLFGCSELEELPRGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQHLQIVDCLNLEFLSKGMESLIQLRILVISDCPSLVSLSHNIKFLTALEVLVIDNCQKLESMDGEAEGQEDIQSFGSLQILFFGDLPQLEALPRWLLHGPTSNTLHQLHISNCPSLRALPESGLQKLVYLQKLEIEDCPELIGRCKTETGEDWQKIAHIPKIYLDGEKIASLTNN* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0281 848 FunFam Probable disease resistance protein At1g61300 151 320 - -
Vvi17g0281 848 SUPERFAMILY L domain-like 477 830 - -
Vvi17g0281 848 Pfam NB-ARC domain 171 412 IPR002182 GO:0043531
Vvi17g0281 848 CDD RX-CC_like 6 133 IPR038005 -
Vvi17g0281 848 Gene3D - 411 501 IPR036388 -
Vvi17g0281 848 PRINTS Disease resistance protein signature 192 207 - -
Vvi17g0281 848 PRINTS Disease resistance protein signature 363 377 - -
Vvi17g0281 848 PRINTS Disease resistance protein signature 595 611 - -
Vvi17g0281 848 PRINTS Disease resistance protein signature 267 281 - -
Vvi17g0281 848 FunFam Probable disease resistance protein At1g63360 412 502 - -
Vvi17g0281 848 Gene3D - 11 123 - -
Vvi17g0281 848 ProSiteProfiles Leucine-rich repeat profile. 599 621 IPR001611 GO:0005515
Vvi17g0281 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 426 IPR027417 -
Vvi17g0281 848 Coils Coil 35 55 - -
Vvi17g0281 848 PANTHER DISEASE RESISTANCE PROTEIN RP 35 811 IPR044974 GO:0006952
Vvi17g0281 848 Pfam Rx N-terminal domain 12 100 IPR041118 -
Vvi17g0281 848 Gene3D Ribonuclease Inhibitor 514 848 IPR032675 -
Vvi17g0281 848 Pfam Leucine rich repeat 578 632 IPR001611 GO:0005515
Vvi17g0281 848 Gene3D - 150 320 IPR027417 -
Vvi17g0281 848 Gene3D - 328 410 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0281 Vvi-Chr17 2901717 2904263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0281 183 814 WRKY Transcription Factor Family AT5G45050 23.284 3.08e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0281 - - vvi:100245709 1288.09