Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0278 ATGGGAAGTGAGAGTATGGTCTCTGTGAAAACAAAACTTCTTGCAGCATTGCTTGTTCTGCAGCTCTGCTATGCAGGGACTCACATTGTCTCCAGGGTTGCACTAAACATTGGTGTCAGCAAGGTTGTATACCCAGTTTATAGGAACCTCATTGCCCTGCTTCTGTTGGGCCCTTTTGCTTATTTCTCAGAGAAGAAGGAGAGACCACCTCTTACTTTCTCTTTGCTGGTTCAGTTCTTCCTTCTAGCATCGCTGGGAATCACTGCAAACCAAGGCTTTTATCTCTTGGGGTTGTATTATGCATCTCCAACTTTTGCATCTGCAATGCAGAACTCAGTTCCAGCAATCACTTTTGTCATGGCTTTTGCTCTGAGGCTTGAGAAGGTTGATATCTCAAGGAGATATGGACTGGCAAAGGTGCTGGGAACCATTGCAAGTATAGGAGGTGCCACAATCATCACTATCTACAAGGGCCCTCCTCTTCTGCACCAGACACATCCCCAACCGGGAAATTCCTTGGAGGAAGACATGTATTCCAGGAAAATGCAGAACTGGACATGGGGCTGTGTATACCTGGTTGGACACTGCCTATCATGGGCTGGTTGGATGGTCCTTCAGGCACCTGTGTTGAGGAACTATCCAGCTAAACTCAGTCTCACTTCATTTACGTGCTTCTTTGGATTGATCCAGTTCTTGATCATAGCAGCCTTTGTAGAAACCAACCCTGAGCTCTGGAAAATTCAATCAGGAGAAGAGCTTTTCACAATTCTATATGCTGGAGTTGTGGCAGCTGGGATCGTCTTCTCCCTTCAAACATGGTGTATTCAAAAAGGAGGTCCTGTTTTTGTTGCTGTCTTCCAGCCCATGCAGACACTTTTAGTCGCTGTCATGGCATCTCTAATTCTTGGCGATCAGTTATACCTTGGAGGGATTATCGGTGCAGCTCTCATTATGATTGGTCTTTACTCGGTTCTATGGGGTAAAACAGAAGAAAAGAGAGTAGGAAGCCAAGATCAGGAACGGACATTGACAAAGCATCTTCTTGATACTGAAAATAGAGATAAAGATGATGCTCCTGCATCAGACATTCCATGA 1095 0.4521 MGSESMVSVKTKLLAALLVLQLCYAGTHIVSRVALNIGVSKVVYPVYRNLIALLLLGPFAYFSEKKERPPLTFSLLVQFFLLASLGITANQGFYLLGLYYASPTFASAMQNSVPAITFVMAFALRLEKVDISRRYGLAKVLGTIASIGGATIITIYKGPPLLHQTHPQPGNSLEEDMYSRKMQNWTWGCVYLVGHCLSWAGWMVLQAPVLRNYPAKLSLTSFTCFFGLIQFLIIAAFVETNPELWKIQSGEELFTILYAGVVAAGIVFSLQTWCIQKGGPVFVAVFQPMQTLLVAVMASLILGDQLYLGGIIGAALIMIGLYSVLWGKTEEKRVGSQDQERTLTKHLLDTENRDKDDAPASDIP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0278 364 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020
Vvi17g0278 364 Pfam EamA-like transporter family 17 153 IPR000620 GO:0016020
Vvi17g0278 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 329 - -
Vvi17g0278 364 MobiDBLite consensus disorder prediction 337 364 - -
Vvi17g0278 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 144 - -
Vvi17g0278 364 PANTHER WAT1-RELATED PROTEIN 14 338 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0278 Vvi-Chr17 2877711 2879446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0278 4 357 Nodulin-like Gene Family AT3G18200 68.627 1.24e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0278 - - vvi:100249272 684.871