Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0268 ATGTCGGAGGTCCCAAATGTTTTCAGTAAGAAAGTAGCCGATCGCTACCTTAAGCGCGAAGTTCTCGGGGAAGGTACCTATGGAGTCGTTTCCAAAGCCATTGATACAAAGATGACATTAAAAGGACTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCGAATAACTTGTTGATAGGAGATAAGGGACAGCTTAAACTTGCAGATTTTGGATTAGCACGTATCTTTGGGAGCCCTGACCGCAAGTTTACTCATCAGGTATTTGCTCGATGGTATAGAGCACCTGAGCTGTTGTTTGGCTCCAAGCAATATGGTCCTGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTCCTCCGCCGACCTTTTCTACAGGGTTCTAGTGACATTGATCAATTAGGAAAGATATTTGCGGCTTTTGGAACACCAAAGCCTGCTCAGTGGCCTGATATGGTATACCTTCCCGATTATGTTGAATACCAATTTGTTCCTGCACCCCCTTTGCGTTCATTGTTTCCAATGGCCAGCGATGATGCTTTAGATCTGCTATCAAAGATGTTCACATACGATCCAAAAACTAGAATTTCGGTGCAGCAGGCATTAGAGCACAGGTACTTCACATCTGGACCTCTGCCTACAGAACCAGCTAAGCTCCCAAGACCTCACCCTAAGAGAGAATCTCTCAATACTAGGGTTTCAGATTTTAATCAGCAGGAGGGTCCTACTGTGTTATCTCCCCCAAGGAAGTCTAGGAGAGTGATGCCACAACGTGATGGATTTGAAGAAAATGCTCACCAAGTTGAGAAGAGTGATGAACATGTAAACGATATCAGACAGGCAACTGGTGAGAGAATGAGCTGGAATGAACATGCACCGATGTCAATAGATTTTTCTGTTTTCGGATCAAGACCCCCACCTAGGCCTACTATTAACAGTGCTGATAAATCACGCCTAAAAAGGAAATTAGATCTTGAATTCCAACAACCTGATCAGGACTGA 1020 0.4412 MSEVPNVFSKKVADRYLKREVLGEGTYGVVSKAIDTKMTLKGLAFCHKKWVLHRDMKPNNLLIGDKGQLKLADFGLARIFGSPDRKFTHQVFARWYRAPELLFGSKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKPAQWPDMVYLPDYVEYQFVPAPPLRSLFPMASDDALDLLSKMFTYDPKTRISVQQALEHRYFTSGPLPTEPAKLPRPHPKRESLNTRVSDFNQQEGPTVLSPPRKSRRVMPQRDGFEENAHQVEKSDEHVNDIRQATGERMSWNEHAPMSIDFSVFGSRPPPRPTINSADKSRLKRKLDLEFQQPDQD* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0268 339 MobiDBLite consensus disorder prediction 303 339 - -
Vvi17g0268 339 Pfam Protein kinase domain 37 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0268 339 MobiDBLite consensus disorder prediction 215 260 - -
Vvi17g0268 339 SUPERFAMILY Protein kinase-like (PK-like) 39 219 IPR011009 -
Vvi17g0268 339 FunFam Putative cyclin-dependent kinase 7 30 229 - -
Vvi17g0268 339 SMART serkin_6 16 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0268 339 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0268 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Vvi17g0268 339 MobiDBLite consensus disorder prediction 320 339 - -
Vvi17g0268 339 MobiDBLite consensus disorder prediction 237 251 - -
Vvi17g0268 339 Gene3D Transferase(Phosphotransferase) domain 1 36 229 - -
Vvi17g0268 339 PANTHER CELL DIVISION PROTEIN KINASE 37 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0268 Vvi-Chr17 2724794 2742734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0268 10 37 Core Cell Cycle Gene Families AT1G18040 85.714 1.10e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vvi17g0268 Pkinase 4.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0268 K02202 - vvi:100247566 628.246