Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0262 ATGGCTTCTCGAAAGCTTCTCTCATCTCTTCTCCGGACCTCCGTCCGCCGTCCGATCTCCAGGTCCGTACTCTCCAACCCTAGATCTCCACTCCCTCGTCCTTCTCCTGTCGGCCACCTCCTCGCCCGCGCGGCTAACTATGCCAGCTCCGCCTCCGCCGCCGCTCCTGCGGCCTCAACTCCCTCTGCCGCCAAGGGGGCTGGTCCCAGCGGCAAGATTACAGACGAGTTCACAGGCGCTGGAGCCATCGGGCAGGTGTGCCAGGTGATCGGAGCCGTCGTGGATGTTAGATTCGATGAAGGTTTGCCTCCGATCTTGACGGCACTGGAGGTTCTGGACAATTCGATCCGGTTGGTTCTGGAGGTCGCTCAGCATTTGGGAGAGAACATGGTGAGGACGATCGCTATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAAGCAGAGTGAAAGCAAGTGTGCACTTGTGTACGGTCAAATGAATGAGCCTCCTGGTGCTCGTGCTCGTGTTGGGCTTACTGGTCTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTCCTCTTTATTGATAACATTTTCCGCTTTACCCAAGCAAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTATCAGCCTACCTTGGCTACAGATCTTGGAGGTCTTCAGGAGCGTATTACCACAACCAAGAAAGGTTCCATCACATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCTCGCATGCTCTCCCCCCATATTTTAGGAGAAGAGCATTATAACACTGCTCGTGGCGTTCAGAAGGTTCTCCAGAACTATAAGAATCTTCAAGATATTATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGACAAGTTGACTGTTGCTCGTGCTCGTAAAATTCAAAGGTTCTTGAGCCAGCCTTTCCATGTTGCTGAAGTGTTCACGGGAGCCCCTGGAAAATACGTAGAACTAAAAGAGAGCATTACCAGTTTCCAAGGTGTCTTGGATGGAAAATACGATGATCTTTCTGAGCAATCTTTCTACATGGTTGGTGGAATTGAAGAAGTTATTGCCAAGGCCGAGAAAATTGCCAAGGAGTCAGCTGCTTAA 1665 0.4919 MASRKLLSSLLRTSVRRPISRSVLSNPRSPLPRPSPVGHLLARAANYASSASAAAPAASTPSAAKGAGPSGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDIKTDHFLPIHREAPSFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0262 554 Pfam ATP synthase alpha/beta family, beta-barrel domain 86 152 IPR004100 GO:0046034|GO:1902600
Vvi17g0262 554 Hamap ATP synthase subunit beta [atpB]. 81 548 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi17g0262 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 436 IPR027417 -
Vvi17g0262 554 NCBIfam F0F1 ATP synthase subunit beta 83 548 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi17g0262 554 CDD ATP-synt_F1_beta_N 82 155 - -
Vvi17g0262 554 ProSitePatterns ATP synthase alpha and beta subunits signature. 421 430 IPR020003 GO:0005524
Vvi17g0262 554 Gene3D - 72 154 - -
Vvi17g0262 554 CDD F1-ATPase_beta_CD 156 435 - -
Vvi17g0262 554 Gene3D - 433 553 IPR024034 -
Vvi17g0262 554 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 209 430 IPR000194 GO:0005524
Vvi17g0262 554 FunFam ATP synthase subunit beta 72 154 - -
Vvi17g0262 554 FunFam ATP synthase subunit beta 433 552 - -
Vvi17g0262 554 CDD ATP-synt_F1_beta_C 437 544 - -
Vvi17g0262 554 Gene3D ATP synthase, F1 beta subunit 1 47 IPR042079 -
Vvi17g0262 554 PANTHER ATP SYNTHASE 65 551 - -
Vvi17g0262 554 Pfam ATP synthase F1 beta subunit 1 43 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vvi17g0262 554 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 81 154 IPR036121 GO:0046034|GO:1902600
Vvi17g0262 554 SMART AAA_5 221 493 IPR003593 GO:0016887
Vvi17g0262 554 FunFam ATP synthase subunit beta 155 432 - -
Vvi17g0262 554 Gene3D - 155 432 IPR027417 -
Vvi17g0262 554 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 433 549 - -
Vvi17g0262 554 PIRSF ATPase_subunit_beta 3 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0262 Vvi-Chr17 2692406 2698450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0262 119 491 Primary Pumps ATPases(2) AT1G20260 28.429 4.00e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0262 K02133 - vvi:100259544 995.727