Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0258 ATGCTGATCTCTTTCCTTGGTCTCTTAGTTAAGGAAATTTCTGCTCCAGAAGATATTGAAGGTCCAGAAGATGCAGAAGGGTATAAGAAGCGGCATCTGAATGTTGTATTTATTGGCCATGTGGATGCGGGCAAGTCCACAACTGGAGGTCAGATATTGTTCCTCAGTGGTCAGGTGGATGATCGTACAATCCAAAAATATGAGAAAGAAGCAAAGGATAAAAGTCGAGAGAGCTGGTATATGGCATATATAATGGACACCAATGAAGAGGAGAGGGTTAAGGGGAAAACAGTTGAAGTTGGCAGAGCACATTTTGAAACAGAAACAACCAGATTTACAATTTTGGATGCACCGGGTCACAAAAGTTATGTCCCAAATATGATCAGCGGTGCGTCTCAAGCTGATATAGGTGTACTTGTTATATCTGCTCGGAAGGGAGAATTTGAAACTGGGTATGAGAGAGGTGGACAGACCCGTGAGCATGTCCAACTTGCAAAGACATTGGGTGTGTCTAAGCTGCTTGTTGTTGTAAATAAGATGGATGATCCTACTGTGAACTGGTCGAAGGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTCCTAAGATCTTCAGGCTACAATGTAAAAAAAGATGTTCATTTTCTTCCATTATCTGGTCTGGTTGGTTTGAACATGAAAACAAGAGTGGACAAAAGTTTATGTTCTTGGTGGAATGGTCCATGCCTTTTTGAAGCCCTTGATGCCATTGATGTGCCTTTCCGAGATCCTAAAGGCCCCTTTAGGATGCCTATTATTGATAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTAGAGTCTGGTAGTGTGCGTGAAGGCGACAGCTTGTTGGTCATGCCAAATAAGGTTCAGGTGAAAGTTTTTGCTGTGTACTGTGATGAGAATAAAGTTAAACTTGCTGGACCTGGTGAAAATGTACGGGTTAGATTATCTGGAATTGAAGAAGAAGACATAATATCAGGATTTGTCCTGTCAAGCATTGCAAAACCAATACCTGCAGTGTACGAGTTTGTTGCCCAGCTGCAGATTCTTGAATTGCTGGATAATGCAATTTTCACTGCTGGTTATAAGGCTGTCTTGCACATTCATTCTATTGTTGAGGAATGTGAGATTATTGAACTGCTGCAGCAAATTGATCCGAAGACAAAGAAACCTATGAAAAAGAAAGTCCTATTCGTAAAGAATGGTGCTGTTGTACTGTGCCGCATTCAGGTGAATAACTTGATTTGCATTGAAAAATTCTCTGATTTCCCACAGCTTGGAAGGTTCACTCTTCGAACTGAAGGAAAAACTGTTGCTATGGGGAAAGTTATGGATCTTAATTCTGCTAGTTCTATTTAA 1389 0.406 MLISFLGLLVKEISAPEDIEGPEDAEGYKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLRSSGYNVKKDVHFLPLSGLVGLNMKTRVDKSLCSWWNGPCLFEALDAIDVPFRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKVQVKVFAVYCDENKVKLAGPGENVRVRLSGIEEEDIISGFVLSSIAKPIPAVYEFVAQLQILELLDNAIFTAGYKAVLHIHSIVEECEIIELLQQIDPKTKKPMKKKVLFVKNGAVVLCRIQVNNLICIEKFSDFPQLGRFTLRTEGKTVAMGKVMDLNSASSI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0258 462 CDD EF1_alpha 34 254 - -
Vvi17g0258 462 Gene3D Translation factors 259 343 - -
Vvi17g0258 462 Gene3D - 15 254 IPR027417 -
Vvi17g0258 462 Gene3D Translation factors 349 457 - -
Vvi17g0258 462 CDD eRF3_II 261 342 - -
Vvi17g0258 462 Pfam Elongation factor Tu domain 2 274 340 IPR004161 GO:0005525
Vvi17g0258 462 SUPERFAMILY Translation proteins 254 346 IPR009000 -
Vvi17g0258 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 86 101 IPR031157 -
Vvi17g0258 462 CDD eRF3_C_III 348 456 - -
Vvi17g0258 462 FunFam Putative translation elongation/initiation factor family protein 348 457 - -
Vvi17g0258 462 PRINTS GTP-binding elongation factor signature 129 140 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 PRINTS GTP-binding elongation factor signature 173 182 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 PRINTS GTP-binding elongation factor signature 113 123 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 351 456 IPR009001 -
Vvi17g0258 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 259 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 Pfam Elongation factor Tu C-terminal domain 347 455 IPR004160 -
Vvi17g0258 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 265 IPR027417 -
Vvi17g0258 462 PANTHER TRANSLATION FACTOR 24 457 - -
Vvi17g0258 462 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 10 254 - -
Vvi17g0258 462 Pfam Elongation factor Tu GTP binding domain 30 243 IPR000795 GO:0003924|GO:0005525
Vvi17g0258 462 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 258 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0258 Vvi-Chr17 2655312 2673179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0258 27 457 Eukaryotic Initiation Factors Gene Family AT5G60390 37.097 1.40e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0258 K03267 - vvi:100249117 887.871