Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0250 ATGGCTGAATCGTTTGCTTTTGCCATAGCTGAGAGTGTTTTGGGGAAGTTGGGCTCTACCCTCATCCAAGAAGTTGGCCTTGCTTGGGGTGTTAAAACCGAGCTGGGAGAGCTCAAGGATACTTTATCCACCATCCACGCCCTGCTCTTGGACGCTGAGGAGAAGCAAGCAACCAATCTTCAGATTAGCGATTGGCTTGGAAAGCTCAAACTCGTCCTTTATGATGCAGAGGATGTGCTCGATGAATTTGACTATGAAGCTTTGCGGCAGCAGGTGGTGGCCAGCGGATCAAGCATTAGGTCAAAGGTACGCAGTTTCATTTCCAGTCCAAAATCGCTTGCGTTCCGTCTTAAGATGGGCCATAGAGTGAAGAATTTAAGAGAGAGATTAGACAAAATTGCAGCTGATAAGTCTAAATTTAATCTCTCCGTGGGAATTGCAAACACCCATGTAGTGCAGAGGGAGAGGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATATCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAAGCAATCCAGTGACACAGAGAATGTTTCTGTTATTCCCATAGTTGGGATTGGGGGGCTAGGCAAGACAACTCTGGCTAAACTTGTGTATAACGATGAGAGGGTAGTGGGTCATTTCTCAATTAAAATGTGGGTTTGTGTGTCAGATGAGTTTGATGTTAAAAAGCTGGTAAAGGAAATCCTTAAGGAGATCAAAGGTGATGAAAATTACAGTGACTTCTCCTTGCAGCAGCTGCAGAGTCCTCTTAGAAATGCATTAGCTGGTGAAAAGTTCTTGCTGGTTTTGGATGACGTGTGGAATACAGATCGTGAGAAGTGGCTTGAGCTGAAGGACTTGCTGATGGACGGGGCCATTGGAAGCAAAATTCTTGTAACTACACGCAAGAAAGCAGTTGCTTCAATCATGGGCACTTTTCCCATGCAAGAACTAAGAGGCCTTTCCCTTGAGGATTGTTTGTCTTTATTTGTGAAATGTGCATTTAAGGACGGAGAAGATGAACAACATCCAAACCTTCTAAAAATTGGGGACCAGATTATTGAGAAATGTGCAGGGGTTCCTCTTGCTGTGAGAAGTTTAGGGAGTTTACTGTATTCGAAAAGGGATGAACGGGATTGGGTATCCATTAAAGAGAGCGGAATTTGGAAATTAGAACAAGATGAAAATAGGATTATGGCTGCATTAAAGCTGAGCTATTATGATTTGCCTCATCACTTGAGACAATGTTTTGCCCTTTGTTCGGTATTTGCCAAAGATTTTGAATTTGCTAATGTTCTTTTGATCTCATTTTGGATGGCGCAAGGCCTCATTCAATCATCGGGACAAAATGCCAGAATGGAGGATATTGGCGAGAGCTATATTAATGAGCTATTGTCGAGATCTTTGTTTCAAGATGTTAAACAAAATGTACAAGGAGTATATTCCTTTAAAATGCATGATCTTGTACATGATCTTGCGTTATTTTTTGCACAACCTGAGTGTGTAACACTACATTTTCACAGTAAAGATATTCCTGAAAGGGTTCAACATGTTTCATTTTCTGATATTGATTGGCCAGAAGAAGAGTTTGAAGCTTTAAGATTCTTGGAGAAGCTAAACAATGTCCGTACCATTGATTTTCAAATAGAAAATGTTGCCCCTAGAAGCAATTCATTTGTTGCTGCATGTGTCTTGAGATTCAAATGTATACGAGTATTGGATTTAACTGAATCAAGCTTTGAAGTGTTGCCTAATTCAATTGATAGTCTGAAGCATCTAAGATCCTTGGGCCTATCTGCTAATAAGAGAATCAAGAAACTCCCTAATTCCATCTGCAAGTTATACCATTTGCAAACTTTGATATTGACTAATTGTTCAGAACTTGAAGAATTACCAAAAAGCATAGGGAGTATGATCAGTTTGAGGATGTTATTTTTAACAATGAAACAAAGGGATTTATTTGGAAAGAAAAAAGAGTTGAGATGCTTGAACTCTCTTCAATATTTACGACTTGTTAATTGTCTCAATTTGGAAGTTTTGTTTAGAGGAATGGAAAGCCGTTTTGCACTTCGAATATTAGTTATTTACAATTGTCCAAGTTTGGTTTCTTTGTCACGTAGTATAAAATTCCTGAATGCATTAGAGCATCTAGTAATTGATCATTGTGAAAAGCTTGAATTCATGGATGGAGAAGCAAAAGAACAAGAAGATATTCAAAGCTTTGGGAGTCTACAAATTTTGCAATTTGAAGATTTACCACTATTGGAGGCTTTACCAAGGTGGCTTCTTCATGGACCTACTTCTAACACTCTACACCATTTAATGATTTCAAGTTGCTCAAACTTGAAAGCATTGCCAACAGATGGTATGCAAAAGCTCACATCCCTTAAAAAATTGGAGATCCATGATTGTCCCGAATTGATTAACAGATGCAGACCTAAAACTGGGGATGATTGGCACAAAATCGCTCATGTATCTGAAATATATTTCGATGGACAAGCAATTACATCATCAACCAATAATTAG 2550 0.3949 MAESFAFAIAESVLGKLGSTLIQEVGLAWGVKTELGELKDTLSTIHALLLDAEEKQATNLQISDWLGKLKLVLYDAEDVLDEFDYEALRQQVVASGSSIRSKVRSFISSPKSLAFRLKMGHRVKNLRERLDKIAADKSKFNLSVGIANTHVVQRERQRETHSFVRASDIIGRDDDKENIVGLLKQSSDTENVSVIPIVGIGGLGKTTLAKLVYNDERVVGHFSIKMWVCVSDEFDVKKLVKEILKEIKGDENYSDFSLQQLQSPLRNALAGEKFLLVLDDVWNTDREKWLELKDLLMDGAIGSKILVTTRKKAVASIMGTFPMQELRGLSLEDCLSLFVKCAFKDGEDEQHPNLLKIGDQIIEKCAGVPLAVRSLGSLLYSKRDERDWVSIKESGIWKLEQDENRIMAALKLSYYDLPHHLRQCFALCSVFAKDFEFANVLLISFWMAQGLIQSSGQNARMEDIGESYINELLSRSLFQDVKQNVQGVYSFKMHDLVHDLALFFAQPECVTLHFHSKDIPERVQHVSFSDIDWPEEEFEALRFLEKLNNVRTIDFQIENVAPRSNSFVAACVLRFKCIRVLDLTESSFEVLPNSIDSLKHLRSLGLSANKRIKKLPNSICKLYHLQTLILTNCSELEELPKSIGSMISLRMLFLTMKQRDLFGKKKELRCLNSLQYLRLVNCLNLEVLFRGMESRFALRILVIYNCPSLVSLSRSIKFLNALEHLVIDHCEKLEFMDGEAKEQEDIQSFGSLQILQFEDLPLLEALPRWLLHGPTSNTLHHLMISSCSNLKALPTDGMQKLTSLKKLEIHDCPELINRCRPKTGDDWHKIAHVSEIYFDGQAITSSTNN* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0250 849 Gene3D Ribonuclease Inhibitor 516 848 IPR032675 -
Vvi17g0250 849 Gene3D - 328 412 IPR042197 -
Vvi17g0250 849 PANTHER DISEASE RESISTANCE PROTEIN RP 35 812 IPR044974 GO:0006952
Vvi17g0250 849 Pfam NB-ARC domain 173 414 IPR002182 GO:0043531
Vvi17g0250 849 FunFam Probable disease resistance protein At1g63360 414 503 - -
Vvi17g0250 849 FunFam Probable disease resistance protein At1g61300 151 321 - -
Vvi17g0250 849 Gene3D - 413 502 IPR036388 -
Vvi17g0250 849 PRINTS Disease resistance protein signature 194 209 - -
Vvi17g0250 849 PRINTS Disease resistance protein signature 365 379 - -
Vvi17g0250 849 PRINTS Disease resistance protein signature 268 282 - -
Vvi17g0250 849 PRINTS Disease resistance protein signature 799 815 - -
Vvi17g0250 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 428 IPR027417 -
Vvi17g0250 849 CDD RX-CC_like 6 134 IPR038005 -
Vvi17g0250 849 Gene3D - 150 320 IPR027417 -
Vvi17g0250 849 Pfam Rx N-terminal domain 11 101 IPR041118 -
Vvi17g0250 849 Gene3D - 10 124 - -
Vvi17g0250 849 SUPERFAMILY L domain-like 492 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0250 Vvi-Chr17 2559221 2561770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0250 191 815 WRKY Transcription Factor Family AT5G45050 22.904 1.25e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0250 - - vvi:100245709 1663.28