Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0246 ATGATTCAAGACAAGGTGGTGGTTGAGGAGAGGGAGGATGAGGTATTTTGGGAGGTTACAAAGAGTGGATCCTTTTCTGTTAAGTCCCTCCTTTCTATCCTCAAGGAAGTAAGGGTGTTATCTGTAAAATGTAGATGGAAAAAGACTCTTCACCCAGCCAGGCATAGGGTGGGAAGATGGACAGCGGATGAAGACAAGCGCTTGAAGGTAGCCGTGATGCTCTTTGGGCCTAAGACATGGACAAAAATAGCTGAATTTGTGCTCGGTCGAACTCAAGTGCAATGTAGAGAAAGATGGGTAAACAGTTTAGATCCTTCCTTGAACTGGGGCCAATGGACTGGAGAGGAGGATGCAAAGTTGAAAGCAGCAATAATGGAACATGGTTATTGTTGGTCTAAGGTTGCTGCATGCATTCCTCCACGTACAGATAGTCAATGCCGGAGGAGATGGAAGGTGCTTTTTCCTCATGAAGTGCCTTTACTTCAAGCAGCCAGAAAGATACAAAAGGTTGCTCTGATATCAAACTTTGTTGATCGGGAGTCAGAACGACCTGCTCTTGGTCCTAAAGACTTTCTTCCAGTGCCAGAAATGGATTCTGTTTCTGAGCCCCAAAAGGATTCACAAAAAAGGAAGAGAAAATCAAAAGTGCAGCCAGAAACTGAGGGGGAAAACAATGCTGCTTCTCGGAATGTTCCAAAAAAGAAAAGATCCCAGAAGCCTCGAAATGGAGCTGAAACCAGTTCCAAGGAAGTCCCAGGAAATAGCAATGCCAATGAAGTTGACAAAGTTGGCGGGGATGATGCGAATTCAAAGAAGAGGAAAAGGGTTAGGAAGCCACAATCGAGGAAGGCTAAATGTTCTGAACCAATACAGGATCGTCCATCATCTGATTTGGATTCAGCAATGTTAGTGATAACTAATGGTGAAGAGGTTGGGGAATTTGCAATGCAAGGTTGTCCATCATCTGATATTGGTTCAGCGATGTTGATGATAACTAATGGTGAAGAGGTTGGGGAATTTGGTGGGCATGATATTACTGACAAGGGAGACTCTCTTGTATCACATTCAAAAAGGGTAAGTACTGTATCCCCTGAAAGTTTGGACCCCCGGATAATTGATGTTGATGGTATTGAGACCATTGGTGCGAATGATACTACCTCACGTAGGAAGAAAAGCACTCCCAAGAGGCATCCTAAAATGAACAAATGTGCTGAACAATCAGGGGAACACCAGGACTCTACCTTGAATGTGAATGGTGCAATGTCAAAAAAGATGAGAAGGGCTCCTAAGCGGCCTCTTAAAAGAAAAATGGGTGCTGATCAATCAGAGGAACACCAGGCATCATCATCTCATGTAGATTCGACATTTGATGGGAATAATGCTACCTCAAATATGAAGAAAAGAACTCCTAAGCTGCATCCCAGAAGGAGAATATATATTGAACAATCAGAAGAACACCAGGCTTCATCCGCTTGTCTGGAATCAATAACCAGTGGTCAAGCAGTTGGTACATCTGGTGGGGGCATTCTTATTGAGGAAAGGGCTCCAAAACCACAAATGCAAATATGTGTGGAAGCAACAGAGAATAGGCCTGATACTTCCTTACATGGAGATTCAAGAGCAACTGTCTGCCAGCAAGATAGGCCCAAAAGGTCAAGGTCAAGGTCAAGGTCAAAAAATAAACCTAATTCTGAGCAGAGTTCTGGAGCAATAGATGTGGATCCCATTAGTTCCATTTTACATGATGACGCAGATGACATGACACTTGCTTGCTTTATAAACCATAGGCTGCCTAAGAGAAGGCTCAAACCCGCCAAAAATGATGATCAAGGATTCAAAGTTGCTTCCCCTCCAGTGTGA 1860 0.4366 MIQDKVVVEEREDEVFWEVTKSGSFSVKSLLSILKEVRVLSVKCRWKKTLHPARHRVGRWTADEDKRLKVAVMLFGPKTWTKIAEFVLGRTQVQCRERWVNSLDPSLNWGQWTGEEDAKLKAAIMEHGYCWSKVAACIPPRTDSQCRRRWKVLFPHEVPLLQAARKIQKVALISNFVDRESERPALGPKDFLPVPEMDSVSEPQKDSQKRKRKSKVQPETEGENNAASRNVPKKKRSQKPRNGAETSSKEVPGNSNANEVDKVGGDDANSKKRKRVRKPQSRKAKCSEPIQDRPSSDLDSAMLVITNGEEVGEFAMQGCPSSDIGSAMLMITNGEEVGEFGGHDITDKGDSLVSHSKRVSTVSPESLDPRIIDVDGIETIGANDTTSRRKKSTPKRHPKMNKCAEQSGEHQDSTLNVNGAMSKKMRRAPKRPLKRKMGADQSEEHQASSSHVDSTFDGNNATSNMKKRTPKLHPRRRIYIEQSEEHQASSACLESITSGQAVGTSGGGILIEERAPKPQMQICVEATENRPDTSLHGDSRATVCQQDRPKRSRSRSRSKNKPNSEQSSGAIDVDPISSILHDDADDMTLACFINHRLPKRRLKPAKNDDQGFKVASPPV* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0246 619 FunFam Transcriptional activator Myb isoform A 56 108 - -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 378 576 - -
Vvi17g0246 619 CDD SANT 112 154 IPR001005 -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 340 364 - -
Vvi17g0246 619 SUPERFAMILY Homeodomain-like 54 150 IPR009057 -
Vvi17g0246 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 99 IPR017930 -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 340 354 - -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 202 219 - -
Vvi17g0246 619 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Vvi17g0246 619 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 45 616 - -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 595 619 - -
Vvi17g0246 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 484 504 - -
Vvi17g0246 619 Gene3D - 111 157 - -
Vvi17g0246 619 Gene3D - 58 108 - -
Vvi17g0246 619 SMART sant 56 105 IPR001005 -
Vvi17g0246 619 SMART sant 108 156 IPR001005 -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 443 467 - -
Vvi17g0246 619 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Vvi17g0246 619 MobiDBLite consensus disorder prediction 183 300 - -
Vvi17g0246 619 Pfam Myb-like DNA-binding domain 110 153 IPR001005 -
Vvi17g0246 619 Pfam Myb-like DNA-binding domain 58 101 IPR001005 -
Vvi17g0246 619 CDD SANT 59 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0246 Vvi-Chr17 2530493 2534945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0246 10 207 MYB-Related Transcription Factor Family AT3G18100 53.030 6.95e-59 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0246 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0246 K09422 - vvi:100268025 1145.95