LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0242	ATGCTGGAAAAAGGGTTGGAATCGATGCGTATTCATGGCTTCACAAAGGAGCTTATTCATGTAGCATGGAGATTTGTCTTAATTCGAAAGGCGATAAAAAATCGCGGTACTTACAGTACTTTATGCACCGAATCGATCTGCTTCGACACTACAAGATCACTCCTGTTGTTGTTTTTGACGGTGGGAACATCCCGTGTAAGGCTACCACCGAGCAGGAGCGATACAGGCATAAAATCTTATTGCGATTTGGCAATGGCAAAGCTCAAAGAAGGTGATGTAACTGGCGCTTCTGAGCTCTTCCAGAGAGCAGTGACCATCACTCCATCCATGGCACATCAACTCATTCAGATTCTGAGAACAGAGAACATTGAATTTGTAGTTGCTCCTTATGAGGCTGATGCTCAATTGGCTTACTTGTCAAACCTTGAGGCAGATAAGGGTGGGATTGCGGCAGTGATCACGGAGGATAGTGATCTAATGGCCTATGGGTGCCGAGCTATCATATTTAAGATGGATCGCTATGGGAATGGCGAAGAGATGGTGCTGGACAGGGTTTTTGATTCTGTGGCTCGTGCACCTTCCTTTCAAAATTTTGATAAAGAATTGTTCACAGGCATGTGTGTACTAGCTGGCTGTGATTTCCTCCCATCTGTTCCTGGAATTGGGATTGCAAGAGCTTATTCCATGGTTGCCAAGTATCGGAATTTAGACCGTGTTCTATCAGTTTTGAAATTTGAGAAGCGCAATCAAATGCCTGAAGATTACACAAAATCTTTCAGAGAAGCAGTTGCAGTCTTCCAGCATGCCAGAATATATGATGCTGACACTAAAAGAGTCCAACACATGAAACCTCTTACAGATGATCTTTTGCAGTCTCTTGATGGAGAGCTTGATTTCCTTGGACCAGAAATACCTCCATCAATAGCAACTGCAATTGCTGAAGGAAACTTGGACCCAGTAACCATGGAGGCTTTTGATCATTTCTCAAGTCATGAAAGTCAGCCGGAGCCTACAGTCACCCAGACTTCTAATGAAATTGTGAAGCCTGAGGCCACTGCACAATCTACAGAAGAGAGCTGCTTCACAATATTTTCCTCTCATGAAACCAGAGAAGAAAGGGTTACAGCTAGTACAGTAATGGAGCAGAGGCCAGTCATAGAGGAAACAAAGTACTTGAATGAAGCTGTGGCACTTCAAAAAATAATGTTCCCATCAGAAGTTCATGGCATGCTGGAAAATAAAATCACTCAGGATGAAACACCGTTAGAGATTCCTGACAACAACCCATTCAAGAAAAGGAAACTTAATGAAATCTACTTGGATCAGATACCAAGCATCACCGAGCAAATATCAGTGGTGGTTGATGTTGATAATTCAGATATCATGTGTGTGACTTTGGAATCTCAAGAGAGTGTGGACTCAAAGCCTAACAAAGTTGCTGATAGGAAAGCAATTAGTAAAAATGAGAAGCGAAAGAGAAGTGATTGCAAGAGTTCAGAGAGTAAGAAAAACAGTATACTGAATTTCTTTTCTCGTGTGTAA	1542	0.4228	MLEKGLESMRIHGFTKELIHVAWRFVLIRKAIKNRGTYSTLCTESICFDTTRSLLLLFLTVGTSRVRLPPSRSDTGIKSYCDLAMAKLKEGDVTGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSNLEADKGGIAAVITEDSDLMAYGCRAIIFKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHARIYDADTKRVQHMKPLTDDLLQSLDGELDFLGPEIPPSIATAIAEGNLDPVTMEAFDHFSSHESQPEPTVTQTSNEIVKPEATAQSTEESCFTIFSSHETREERVTASTVMEQRPVIEETKYLNEAVALQKIMFPSEVHGMLENKITQDETPLEIPDNNPFKKRKLNEIYLDQIPSITEQISVVVDVDNSDIMCVTLESQESVDSKPNKVADRKAISKNEKRKRSDCKSSESKKNSILNFFSRV*	514

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0242	513	SUPERFAMILY	PIN domain-like	81	213	IPR029060	-
	Vvi17g0242	513	ProSitePatterns	XPG protein signature 2.	122	136	IPR019974	GO:0016788
	Vvi17g0242	513	Pfam	XPG I-region	122	213	IPR006086	GO:0004518
	Vvi17g0242	513	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	118	135	IPR006084	-
	Vvi17g0242	513	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Vvi17g0242	513	ProSiteProfiles	TPR repeat profile.	77	110	IPR019734	GO:0005515
	Vvi17g0242	513	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	199	334	IPR036279	-
	Vvi17g0242	513	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	90	499	IPR006084	-
	Vvi17g0242	513	CDD	H3TH_FEN1-like	201	273	-	-
	Vvi17g0242	513	FunFam	exonuclease 1	196	269	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0242	Vvi-Chr17	2499560	2504233	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0242	92	299	Core DNA Replication Machinery Family	AT5G26680	25.688	1.44e-09	58.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0242	K10746		-	vvi:100262876	852.047

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