Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0242 ATGCTGGAAAAAGGGTTGGAATCGATGCGTATTCATGGCTTCACAAAGGAGCTTATTCATGTAGCATGGAGATTTGTCTTAATTCGAAAGGCGATAAAAAATCGCGGTACTTACAGTACTTTATGCACCGAATCGATCTGCTTCGACACTACAAGATCACTCCTGTTGTTGTTTTTGACGGTGGGAACATCCCGTGTAAGGCTACCACCGAGCAGGAGCGATACAGGCATAAAATCTTATTGCGATTTGGCAATGGCAAAGCTCAAAGAAGGTGATGTAACTGGCGCTTCTGAGCTCTTCCAGAGAGCAGTGACCATCACTCCATCCATGGCACATCAACTCATTCAGATTCTGAGAACAGAGAACATTGAATTTGTAGTTGCTCCTTATGAGGCTGATGCTCAATTGGCTTACTTGTCAAACCTTGAGGCAGATAAGGGTGGGATTGCGGCAGTGATCACGGAGGATAGTGATCTAATGGCCTATGGGTGCCGAGCTATCATATTTAAGATGGATCGCTATGGGAATGGCGAAGAGATGGTGCTGGACAGGGTTTTTGATTCTGTGGCTCGTGCACCTTCCTTTCAAAATTTTGATAAAGAATTGTTCACAGGCATGTGTGTACTAGCTGGCTGTGATTTCCTCCCATCTGTTCCTGGAATTGGGATTGCAAGAGCTTATTCCATGGTTGCCAAGTATCGGAATTTAGACCGTGTTCTATCAGTTTTGAAATTTGAGAAGCGCAATCAAATGCCTGAAGATTACACAAAATCTTTCAGAGAAGCAGTTGCAGTCTTCCAGCATGCCAGAATATATGATGCTGACACTAAAAGAGTCCAACACATGAAACCTCTTACAGATGATCTTTTGCAGTCTCTTGATGGAGAGCTTGATTTCCTTGGACCAGAAATACCTCCATCAATAGCAACTGCAATTGCTGAAGGAAACTTGGACCCAGTAACCATGGAGGCTTTTGATCATTTCTCAAGTCATGAAAGTCAGCCGGAGCCTACAGTCACCCAGACTTCTAATGAAATTGTGAAGCCTGAGGCCACTGCACAATCTACAGAAGAGAGCTGCTTCACAATATTTTCCTCTCATGAAACCAGAGAAGAAAGGGTTACAGCTAGTACAGTAATGGAGCAGAGGCCAGTCATAGAGGAAACAAAGTACTTGAATGAAGCTGTGGCACTTCAAAAAATAATGTTCCCATCAGAAGTTCATGGCATGCTGGAAAATAAAATCACTCAGGATGAAACACCGTTAGAGATTCCTGACAACAACCCATTCAAGAAAAGGAAACTTAATGAAATCTACTTGGATCAGATACCAAGCATCACCGAGCAAATATCAGTGGTGGTTGATGTTGATAATTCAGATATCATGTGTGTGACTTTGGAATCTCAAGAGAGTGTGGACTCAAAGCCTAACAAAGTTGCTGATAGGAAAGCAATTAGTAAAAATGAGAAGCGAAAGAGAAGTGATTGCAAGAGTTCAGAGAGTAAGAAAAACAGTATACTGAATTTCTTTTCTCGTGTGTAA 1542 0.4228 MLEKGLESMRIHGFTKELIHVAWRFVLIRKAIKNRGTYSTLCTESICFDTTRSLLLLFLTVGTSRVRLPPSRSDTGIKSYCDLAMAKLKEGDVTGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSNLEADKGGIAAVITEDSDLMAYGCRAIIFKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHARIYDADTKRVQHMKPLTDDLLQSLDGELDFLGPEIPPSIATAIAEGNLDPVTMEAFDHFSSHESQPEPTVTQTSNEIVKPEATAQSTEESCFTIFSSHETREERVTASTVMEQRPVIEETKYLNEAVALQKIMFPSEVHGMLENKITQDETPLEIPDNNPFKKRKLNEIYLDQIPSITEQISVVVDVDNSDIMCVTLESQESVDSKPNKVADRKAISKNEKRKRSDCKSSESKKNSILNFFSRV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0242 513 SUPERFAMILY PIN domain-like 81 213 IPR029060 -
Vvi17g0242 513 ProSitePatterns XPG protein signature 2. 122 136 IPR019974 GO:0016788
Vvi17g0242 513 Pfam XPG I-region 122 213 IPR006086 GO:0004518
Vvi17g0242 513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 118 135 IPR006084 -
Vvi17g0242 513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vvi17g0242 513 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Vvi17g0242 513 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 334 IPR036279 -
Vvi17g0242 513 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 90 499 IPR006084 -
Vvi17g0242 513 CDD H3TH_FEN1-like 201 273 - -
Vvi17g0242 513 FunFam exonuclease 1 196 269 - -
Vvi17g0242 513 SMART xpgineu 119 195 IPR006086 GO:0004518
Vvi17g0242 513 MobiDBLite consensus disorder prediction 472 504 - -
Vvi17g0242 513 Gene3D - 196 269 - -
Vvi17g0242 513 SMART HhH_4 200 233 IPR008918 GO:0003677|GO:0003824
Vvi17g0242 513 MobiDBLite consensus disorder prediction 474 500 - -
Vvi17g0242 513 Gene3D - 72 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0242 Vvi-Chr17 2499560 2504233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0242 92 299 Core DNA Replication Machinery Family AT5G26680 25.688 1.44e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0242 K10746 - vvi:100262876 852.047