Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0240 ATGCCAGAGCTCTCTGAAACCTACGCCTGCGTGCCGTCCACGGAGCGCGGCCGAGGCATTCTCATCTCCGGCGATCCCAAATCCAATGCCATTCTCTATACCAACGGTAGATCCGTCATCATCCGCTACCTCCATAAGCCTCTCGAGGTCTCCATCTATGGAGAGCACGCGTATCAGGCTACCGTGGCGCGTTTCTCCCCCAACGGCGAGTGGATCGCATCAGCGGACGTCTCAGGAACGGTTAGGATTTGGGGGACGCACAATGATCATGTGCTGAAGAAGGAGTTTAGGGTTTTGTCTGGTCGGATCGATGATCTTCAATGGTCAGCGGATGGGATGAGGATCGTGGTGTCTGGTGACGGCAAGGGCAAGTCGTTTGTTCGCGCTTTTATGTGGGACTCAGGCAGTAATGTGGGGGAGTTTGATGGCCATTCAAAGCGAGTTCTTAGCTGTGCATTTAAGCCAACCAGACCATTTCGCATAGTCACATGTGGAGAGGACTTTCTAGTGAACTTCTACGAAGGACCACCTTTTAAATTCAAGCAATCCCACAGGCATCATTCAAATTTTGTCAACTGTATAAGGTATTCTCCAGATGGGAGCAAGTTCATCAGTGTAAGTTCTGATAAGAAGGGTGTGATTTATGATGGAAAAACCGGAGAGAAGATTGGAGAGCTATCCTCTGAAGATGGTCATAAAGGCAGCATCTATGCTGTCAGCTGGAGTCCTGATAGTAAACAAGTGTTGACTGTGTCTGCTGACAAGTCTGCAAAAGTATGGGAGATCTCTGAGGATGGTAATGGAAAGGTGAAGAAAACTTTAACTTGTCCCGGCTCAGGAGGAGTGGAAGACATGTTAGTGGGGTGTCTTTGGCAAAATGATCATCTTGTCACGATTTCTCTTGGTGGCACAGTCAGTATATTCTCAGCAAGTGATCTGGATAAAGGCCCATTATCGTTCTCTGGACACATGAAGAATGTTAATTCACTAGCAGTACTCAAAAGCAATCCCAAAGTTATGTTGTCCACCAGCTATGATGGTTTAATAATTAAATGGATTCAAGGAATTGGATATAGCGGAAGATTGGATAGGAAAGAGAATTCTCAAATCAAGTGTTTTGCAGCAGTTGAAGAAGAGATTGTTTCATCTGGATTTGACAACAAGATTTGGAGAGTTTCTCTACAAGGGGATCAATGTGGGGATGCAGATTGCGTTGATATTGGCAGTCAACCAAAGGACTTGAGCCTTTCCCTTCTTTCTCCTGAACTGGCACTGGTTTCAACTGATTCAGGAGTTGTTATTCTCCGTGGTACAAATGTAGTATCGACCATTAACCTTGGGTTTCCTGTGGCCGCATCTGTAATCTCACCTGATGGAAGTGAAGCTATAATAGGTGGGCAGGATGGCAAATTACACATATATTCTGTCACAGGTGATACTTTAAAAGAAGAGGCAGTACTTGAGAAACATCGTGGTGCAATTACTGTTATACGTTATTCCCCAGATGTTTCTATGTTTGCATCAGGAGATGCCAATCGAGAAGCTGTTGTCTGGGACCGTGCTTCCAGAGAGGTGAGGGTTAAGAACATGTTGTACCATACTGCCCGCATAAATTGCCTGGCCTGGTCTCCTGATAACAGCATGGTAGCTACTGGGTCACTCGACACATGTGTCATCATATATGAGATTGACAAGCCAGCATCCAGCCGTGTCACCATAAAGGGAGCCCACTTGGGTGGGGTTTATGGTTTAGCATTTACTGATGATACCAGTGTGGTGAGTTCTGGCGAAGATGCTTGTGTTCGAGTTTGGAAGTTAACCCCACAATAG 1830 0.4601 MPELSETYACVPSTERGRGILISGDPKSNAILYTNGRSVIIRYLHKPLEVSIYGEHAYQATVARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFRVLSGRIDDLQWSADGMRIVVSGDGKGKSFVRAFMWDSGSNVGEFDGHSKRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKQSHRHHSNFVNCIRYSPDGSKFISVSSDKKGVIYDGKTGEKIGELSSEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWEISEDGNGKVKKTLTCPGSGGVEDMLVGCLWQNDHLVTISLGGTVSIFSASDLDKGPLSFSGHMKNVNSLAVLKSNPKVMLSTSYDGLIIKWIQGIGYSGRLDRKENSQIKCFAAVEEEIVSSGFDNKIWRVSLQGDQCGDADCVDIGSQPKDLSLSLLSPELALVSTDSGVVILRGTNVVSTINLGFPVAASVISPDGSEAIIGGQDGKLHIYSVTGDTLKEEAVLEKHRGAITVIRYSPDVSMFASGDANREAVVWDRASREVRVKNMLYHTARINCLAWSPDNSMVATGSLDTCVIIYEIDKPASSRVTIKGAHLGGVYGLAFTDDTSVVSSGEDACVRVWKLTPQ* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0240 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 3 606 - -
Vvi17g0240 609 SUPERFAMILY WD40 repeat-like 319 606 IPR036322 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 571 IPR001680 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 263 IPR001680 GO:0005515
Vvi17g0240 609 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Vvi17g0240 609 Pfam WD domain, G-beta repeat 135 172 IPR001680 GO:0005515
Vvi17g0240 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Vvi17g0240 609 Pfam WD domain, G-beta repeat 226 260 IPR001680 GO:0005515
Vvi17g0240 609 Pfam WD domain, G-beta repeat 575 605 IPR001680 GO:0005515
Vvi17g0240 609 Pfam WD domain, G-beta repeat 63 84 IPR001680 GO:0005515
Vvi17g0240 609 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 89 133 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 524 562 IPR001680 GO:0005515
Vvi17g0240 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 564 - -
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 263 - -
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vvi17g0240 609 Gene3D - 11 337 IPR015943 GO:0005515
Vvi17g0240 609 FunFam Actin-interacting protein 1 11 337 - -
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
Vvi17g0240 609 CDD WD40 56 352 - -
Vvi17g0240 609 Gene3D - 7 605 IPR015943 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Vvi17g0240 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Vvi17g0240 609 FunFam Actin-interacting protein 1 338 606 - -
Vvi17g0240 609 SUPERFAMILY WD40 repeat-like 26 352 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0240 187 509 Eukaryotic Initiation Factors Gene Family AT2G46290 23.276 2.74e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0240 K24736 - vvi:100266198 1224.92