Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0239 ATGGTTGCAATGAGGAAGCCTGCAGGCTATGGTGAGAAGAAAAGCACAAAGAAAAGAGTTGGGTGTGAAAAGAAATTCACTAACAAGGGGGCTTGGTCCAAGCAAGAAGACCAGAAGCTCATTGATTATATCCAAAAGCATGGTGAAGGTTGCTGGAGCTCACTTCCTCAGTCTGCAGGCTTGCTTCGTTGCGGGAAAAGTTGCCGGCTGAGATGGGTGAACTACCTAAAGCCTGATGTTAAGCGTGGGAACTTTGGGGAAGACGAAGAGGACCTCATCATTAAGCTCCATGCGCTTCTTGGAAACAGGTGGTCATTGATAGCGGGAAGATTGCCCGGAAGGACAGACAATGAAGTAAAGAACTATTGGAATTCTCATCTAAAGAAAAAGCTAATGCGGATGGGCATTGATCCTAATAACCATCGCCTCGGAGAAAGGGCTTCGGGTACTAGCAAATCATTTGAATCCAGGGACCAGACAAGCAATCCTCTAATCTCAGCTGCCGATAATAATGCAGTCTTGGATTCTACATGTGGCTCAGCGAGCAAGACAACAAGCAGTTTGCCTGACCTAAACCTTAATCTCAATGTGGGGGCTCCATCAGTAGATGAACAAATGCAGCTAACTGGGGCAAATAGTCATAAGGAACTTGAACCTGCTCCCTTTACAACTCTACTTCTTTTTGGATGA 690 0.458 MVAMRKPAGYGEKKSTKKRVGCEKKFTNKGAWSKQEDQKLIDYIQKHGEGCWSSLPQSAGLLRCGKSCRLRWVNYLKPDVKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLKKKLMRMGIDPNNHRLGERASGTSKSFESRDQTSNPLISAADNNAVLDSTCGSASKTTSSLPDLNLNLNVGAPSVDEQMQLTGANSHKELEPAPFTTLLLFG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0239 229 Pfam Myb-like DNA-binding domain 82 127 IPR001005 -
Vvi17g0239 229 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Vvi17g0239 229 FunFam MYB transcription factor 83 143 - -
Vvi17g0239 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 22 166 - -
Vvi17g0239 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Vvi17g0239 229 MobiDBLite consensus disorder prediction 144 162 - -
Vvi17g0239 229 CDD SANT 31 76 IPR001005 -
Vvi17g0239 229 MobiDBLite consensus disorder prediction 138 162 - -
Vvi17g0239 229 Gene3D - 29 81 - -
Vvi17g0239 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Vvi17g0239 229 CDD SANT 84 127 IPR001005 -
Vvi17g0239 229 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Vvi17g0239 229 FunFam MYB-related transcription factor 28 81 - -
Vvi17g0239 229 SUPERFAMILY Homeodomain-like 28 123 IPR009057 -
Vvi17g0239 229 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Vvi17g0239 229 Gene3D - 84 160 - -
Vvi17g0239 229 SMART sant 28 78 IPR001005 -
Vvi17g0239 229 SMART sant 81 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0239 Vvi-Chr17 2463109 2464173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0239 22 142 MYB Transcription Factor Family AT4G09460 76.033 3.01e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0239 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0239 K09422 - vvi:100257749 467.618