Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0238 ATGAGGAAACCTTGCTGTGAGAAGAAAGATACAAATAAAGGAGCTTGGTCGAAGGAGGAAGACCAGAAGCTTATTGATTACATCCAAAAGCATGGTGAAGGTAGCTGGCGCTCACTTCCACAAGCGGCAGGCTTGCTTCGTTGCGGCAAAAGTTGCCGGTTGAGATGGCTAAACTATCTAAGGCCAGACCTAAAGCGAGGCAACTTTGCTGAAGATGAAGAAGACCTCATCGTCAAACTCCATGCTCTCTTAGGAAACCGATGGTCCCTGATAGCGGGTAGATTGCCAGGAAGGACTGACAATGAGGTGAAGAATTACTGGAATTCTCATCTAAAGAGAAAGCTCATAAGGATGGGTATCAATCCTGATAAGCATCATGTAAGACAGTCCATTTCTCGTCAACACCCGGTAACACCTCATGGCAAAAAGGATCAGTTATCCAACGATGCAACTTTCCTAGTCAAGAAAACAAGTGGGTTGCCTGATTTGAACCTCAATCTCACCTTGTCTAATAATATTGTGGAATAG 528 0.4451 MRKPCCEKKDTNKGAWSKEEDQKLIDYIQKHGEGSWRSLPQAAGLLRCGKSCRLRWLNYLRPDLKRGNFAEDEEDLIVKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLKRKLIRMGINPDKHHVRQSISRQHPVTPHGKKDQLSNDATFLVKKTSGLPDLNLNLTLSNNIVE* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0238 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vvi17g0238 175 FunFam Transcription factor MYB7 68 159 - -
Vvi17g0238 175 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vvi17g0238 175 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vvi17g0238 175 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi17g0238 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vvi17g0238 175 CDD SANT 68 111 IPR001005 -
Vvi17g0238 175 CDD SANT 15 60 IPR001005 -
Vvi17g0238 175 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vvi17g0238 175 Gene3D - 13 65 - -
Vvi17g0238 175 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi17g0238 175 SMART sant 65 113 IPR001005 -
Vvi17g0238 175 SMART sant 12 62 IPR001005 -
Vvi17g0238 175 Gene3D - 68 143 - -
Vvi17g0238 175 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 134 - -
Vvi17g0238 175 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0238 Vvi-Chr17 2458363 2459372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0238 2 174 MYB Transcription Factor Family AT2G16720 60.000 6.42e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0238 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0238 K09422 - vvi:100250750 369.392