Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0230 ATGGGGAGTGGAACACTGGTGGATGGCGTTCGTCGCTGGTTTCAACGCCGCTCTTCAACCTCCTCCACTACCACCACCACCACCACCAACAATGACTCCAACAATGCCGCAATCCATGCTTCTTGTGTATTTGTGACCGAAGTCCACGCTCAATCCTCAGCTTCAGCCACACAGCCTCGTCCTCATCATAAAAAACGACAGCCACAAGACCCGGAAGCAGCCCCTGCTTTGACGCTCATCAAAGTCCCCAAACGACGACCCATGGATCCTCACAAGAAGGGCATGCCAGAAACAGAATTCTTCACAGAATATGGAGAGGCGAGCAGATACCAAGTCCAGGAAGTTGTTGGCAAAGGAAGTTATGGTGTTGTTGGCTCTGCAATTGATACCCACACTGGAGAAAAGGTTGCAATCAAGAAGATTAATGATGTCTTTGAACATGTCTCTGATGCTACACGGATTCTAAGAGAAATCAAGCTCTTACGGTTGCTTCGGCATCCGGATATTGTAGAAATAAAACATATCATGCTCCCGCCTTCTCGAAGAGAATTTAGAGATATTTACGTTGTTTTTGAATTGATGGAATCTGATCTTCATCAAGTAATTAAGGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGTCTAAAATATATACATACAGCAAATGTGTTTCATCGAGATTTGAAGCCAAAAAATATTCTTGCTAATGCCGACTGCAAGTTGAAGATTTGTGATTTTGGGCTTGCTCGGGTGTCATTCAATGATGCACCATCAGCTATTTTCTGGACAGACTATGTTGCAACCCGATGGTACCGTGCTCCTGAACTTTGTGGCTCCTTTTTCTCCAAGTACACTCCTGCGATTGATATTTGGAGCATAGGATGCATATTTGCAGAAATGCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTTCTGCTGAATCAATCGCAAGGATTCGGAATGAGAAGGCAAGAAGATATCTAAGTACCATGCGAAAAAAACCATCCATTCCCTTCTCACAAAAATTCCCTGATGCTGATCCGTTGGCTCTTCATCTAGTGGAACGTCTCCTTGCATTTGATCCTAAAGATCGTCCAACTGCTGAAGAGGCTTTAGCTGATCCGTATTTTGATGGTTTGGCAAATGTAGATCGTGAACCTTCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTAACAAAAGATGATGTTAGGGAGTTAATATATCGAGAGATCCTAGAGTATCATCCCCAGATGCTGCAGGAGTATCTTCGTGGTGGAGATCAAACTAGCTTCATGTACCCGAGTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCTAGAGAGCGGGTTTGTGCACCTATTAATGAGGCTGCTGATGAAAATAAGGAATTTGAAAAGCGTTCTGCTGCCTCTGTTGCTACAACTCTTGAGAGTCCTCCAAAAGCTGAGGGTTTAGAGAAAGGAAATGTAGAAAATGGACCCAGCAAGCCAAACCAAAGTGCTCGTAGCCTATTGAAGAGTGCTAGTATTAGTGCTTCCAAGTGTATAGGTGTGAAGGAACAAAAAGATGTTGAGGAGGAAACAATTGTCGAGCACGATGATGAGGGTGTCAATGGGTTATCCCACGACTTAGCAGCTCTCAATTCCTGA 1806 0.443 MGSGTLVDGVRRWFQRRSSTSSTTTTTTTNNDSNNAAIHASCVFVTEVHAQSSASATQPRPHHKKRQPQDPEAAPALTLIKVPKRRPMDPHKKGMPETEFFTEYGEASRYQVQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPSAESIARIRNEKARRYLSTMRKKPSIPFSQKFPDADPLALHLVERLLAFDPKDRPTAEEALADPYFDGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPINEAADENKEFEKRSAASVATTLESPPKAEGLEKGNVENGPSKPNQSARSLLKSASISASKCIGVKEQKDVEEETIVEHDDEGVNGLSHDLAALNS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0230 601 CDD STKc_TDY_MAPK 109 446 - -
Vvi17g0230 601 ProSiteProfiles Protein kinase domain profile. 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0230 601 FunFam Mitogen-activated protein kinase 425 447 - -
Vvi17g0230 601 Gene3D Transferase(Phosphotransferase) domain 1 196 424 - -
Vvi17g0230 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 109 454 - -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 51 77 - -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 480 601 - -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 14 34 - -
Vvi17g0230 601 SUPERFAMILY Protein kinase-like (PK-like) 106 406 IPR011009 -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 544 562 - -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 1 34 - -
Vvi17g0230 601 FunFam Mitogen-activated protein kinase 99 204 - -
Vvi17g0230 601 MobiDBLite consensus disorder prediction 505 519 - -
Vvi17g0230 601 Gene3D Phosphorylase Kinase; domain 1 126 447 - -
Vvi17g0230 601 ProSitePatterns Protein kinases ATP-binding region signature. 116 140 IPR017441 GO:0005524
Vvi17g0230 601 FunFam Mitogen-activated protein kinase 196 424 - -
Vvi17g0230 601 SMART serkin_6 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0230 601 ProSitePatterns MAP kinase signature. 145 248 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi17g0230 601 Pfam Protein kinase domain 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0230 Vvi-Chr17 2368322 2377336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0230 97 601 MAP Kinase Gene Family AT3G18040 83.168 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi17g0230 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0230 - - vvi:100853858 1178.7