Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0227 ATGAAGAACATTCTGAAGAAGCTCCATATTGTGTCGAATCAAACCGAAGACGTTGAAGGGTCTACTTCATCAAGGGGAAGCAAGACTCATGATGGGTCATCCCCAGATAGGCTTTTGCATTCTCGGCCCCATCATAATTCCGAGCATAAACCCTTTTCGGGTCTTTCGAATTGGTTGAATTCAGTTGCTAATAGACATAGCCCCAGTCCCCCATTATCTTCAAATGTCACAAGAGTAGAGAGATCAGAACCATCTGATTCCATGAGCAGTTGCGGTTTGGACGTCGTTTCAGATGCAGTGAGGCGTGACTCAGGGTCTAGCAATTCAAGGGATCCGGATATAGAGGAGGAGTATCAGATACAATTGGCCTTGGAGTTGAGTGCGAGGGAGGATCCTGAAGCAGTTCAGATTGAAGCCGTTAAGCAGATCAGTTTGGGCTCTTGTGCTCCAGAAAATACTCCAGCAGAAATTGTTGCTTATCGATACTGGAATTACAATGCTCTTAGCTATGATGACAAGATCTTGGATGGTTTTTACGACCTGTATGGAATTTTGATGGAGTCCACCTCACAAAAGATGCCTTCCCTTGTTGATCTACAAGGAACACCATTATCAGATTGTGTCACCTGGGAAGCAGTTTTGGTCAATAGAGCTGCTGATGCTAACCTGTTAAAACTTGAACAGGAGGCCCTGGTCATGGCCGTCAAGTCAAGGTCGGAATCTCCAGTTTTTGTAGGTAGTGATTTGGTGCAAAGGCTTGCTGCTTTAGTTGCTGCGAATATGGGTGGACCAGTTGGGGATCCAGTCAACATGTCAAGAGCGTGGCAAAGTCTCAGTTACAGTTTGAAAGCAACCCTTGGGAGCATGGTTTTGCCTCTTGGTTCTCTGACAATTGGATTGGCTCGCCATCGGGCATTGTTGTTCAAGGTTTTGGCTGATAGTGTGGGCATCCCATGCCGATTAGTGAAAGGACAGCAATATACAGGTTCTGATGATGTGGCAATGAACTTCGTGAAGATTGAAGATGGAAGGGAGTACATTGTTGATCTAATGGCAGATCCTGGAACACTTATTCCATCTGATGCAGCAGGATCGCATATAGAATATGATGATTCTATCTTTTCGGCCAGTACTTTGTCTAGAGAGATAGACTCCTCATATATAGCCTCTTCTAGCAGTGGGGTTGTGAGGCCATATCTGTCAGCTGTTGGAAATGAATCTGATGACAGAGGGGAACTTACGGCTTGTGCAAATCTACCCAGGCCAAGTAAAGATAGTTTGAATGCAGAGCAGACTCTGCTTCGGGCACTTCCCAGCAGGCCTAGCCATCCGTACATGCATGGAAGATCTCCCTCCTGGACAGAAGGTGTAAGCTCTCCAGCGGTGCGTAGAATGAAAGTGAAGGATGTTTCACAATATATGATTGATGCTGCCAAAGAAAATCCACAGTTGGCCCAGAAACTTCATGATGTGTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACCTATTCACTGAAATTTATCCCGAGCATATAGATGTGTCAATAGTTGAGGCCAAGTCCCCAACTGAAGATAAAGATGAAAATGAAAAGAGACCAGTAATCCGGAAAATTAAAGATCAAGATGACCTTGGTCCGATTGGCTTTTTGCCACCTCTGCCTTATCATGGGATGCAACCTAGAGTAAGTCCTTGTGTACAGCCAGATCTTAAGCCTGTGGAAGGTTTAGGGTTTAACAATCTGCTAGATTTTAAAGAAGTAACTGGGCAGTCTGTTTCATCACAATCAGAGGTGAATCCTGTGAAATATGTGAAGAATGTTCCTGTTGCTGCTGCTGCAGCGGCAGCAGCAGTTGTTGCATCTTCAATGGTTGTTGCTGCAGCAAAGTCAACTGCTGACCCAAACCTTGAACTTCCTGTGGCGGCTGCTGCCACTGCTGCTGCAGCAGTCGTAGCAACAACTGCAGCTGTTGGTAAGCAGTATGAGAACTTGGAAACTGGTGTTCATTCTCCAAGTGGTGCTGCTGAGTGCTTTAACCAAACGGATGGCATGCAAAGTGGGGGAGATGCAGATGGTGCTGGTTATGAGCCTCATGGTAGTGGTAACCGGGAGCATGATGCTTCTGGGACAAATCCTGAAGGAGAGAGAACATCGGATAGATCTGCGGATAGCACAAAATCAGATGTGGCACTTGATGATGTTGCAGACTGTGAGATCCCATGGGATGAAATCGCCTTGGGTGAGCGTATCGGACTTGGATCGTATGGGGAGGTATATCGTGGAGACTGGCATGGCACTGAAGTTGCTGTTAAGAAGTTCCTGGACCAAGATATTTCTGGTGAATCACTTGACGAATTCAGAAGTGAGGTGCGGATCATGAAAAGACTAAGGCATCCCAATGTTGTTCTCTTCATGGGAGCGGTAACTCGTGTCCCAAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGTTTGTATAGACTAATTCACCGGCCTAACAATCAATTAGATGAAAGGAGGCGTTTGAGGATGGCCCTTGATGCTGCTCGGGGAATGAATTATTTGCATAATTGCACTCCAGTAATAGTTCATCGTGATTTGAAGTCTCCAAACCTTCTTGTCGATAAGAATTGGGTTGTGAAGGTATGCGACTTTGGCTTATCACGAATGAAGCATAGTACTTTTCTTTCTTCCAGGTCAACTGCAGGGACGGCTGAGTGGATGGCTCCGGAAGTACTAAGAAATGAGCCTTCAGATGAAAAGTGTGATGTTTTCAGCTTTGGGGTCATATTATGGGAACTCTCTACATTACAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGATTCCAGCATCGCCGTCTTGACATTCCAGATGATATGGATCCTGTTGTGGCAGATATTATTAGGAGATGCTGGCACACAAATCCAAAAATGAGGCCTACATTTGCTGAAATCATGGCTACTCTGAAACCATTGCAAAAGCCTATAACCAGTTCACAAGTGCCTAGACCTAGTGCAGCAATAAGCAGTGGTCAGGAGAGGGTTCAACCATCACGAGCTGCAGAAGAACCAGCAGAATAA 3102 0.4542 MKNILKKLHIVSNQTEDVEGSTSSRGSKTHDGSSPDRLLHSRPHHNSEHKPFSGLSNWLNSVANRHSPSPPLSSNVTRVERSEPSDSMSSCGLDVVSDAVRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAVQIEAVKQISLGSCAPENTPAEIVAYRYWNYNALSYDDKILDGFYDLYGILMESTSQKMPSLVDLQGTPLSDCVTWEAVLVNRAADANLLKLEQEALVMAVKSRSESPVFVGSDLVQRLAALVAANMGGPVGDPVNMSRAWQSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSVGIPCRLVKGQQYTGSDDVAMNFVKIEDGREYIVDLMADPGTLIPSDAAGSHIEYDDSIFSASTLSREIDSSYIASSSSGVVRPYLSAVGNESDDRGELTACANLPRPSKDSLNAEQTLLRALPSRPSHPYMHGRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPQLAQKLHDVLLESGVVAPPNLFTEIYPEHIDVSIVEAKSPTEDKDENEKRPVIRKIKDQDDLGPIGFLPPLPYHGMQPRVSPCVQPDLKPVEGLGFNNLLDFKEVTGQSVSSQSEVNPVKYVKNVPVAAAAAAAAVVASSMVVAAAKSTADPNLELPVAAAATAAAAVVATTAAVGKQYENLETGVHSPSGAAECFNQTDGMQSGGDADGAGYEPHGSGNREHDASGTNPEGERTSDRSADSTKSDVALDDVADCEIPWDEIALGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLDEFRSEVRIMKRLRHPNVVLFMGAVTRVPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDMDPVVADIIRRCWHTNPKMRPTFAEIMATLKPLQKPITSSQVPRPSAAISSGQERVQPSRAAEEPAE* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0227 1033 Gene3D Phosphorylase Kinase; domain 1 737 821 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 30 49 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 666 729 - -
Vvi17g0227 1033 SUPERFAMILY Protein kinase-like (PK-like) 731 995 IPR011009 -
Vvi17g0227 1033 FunFam Serine/threonine-protein kinase isoform 1 735 822 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 1 116 - -
Vvi17g0227 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 863 875 IPR008271 GO:0004672|GO:0006468
Vvi17g0227 1033 CDD STKc_MAP3K-like 750 996 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 50 92 - -
Vvi17g0227 1033 Pfam Protein tyrosine and serine/threonine kinase 745 996 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 ProSiteProfiles Protein kinase domain profile. 744 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0227 1033 Pfam Ethylene-responsive protein kinase Le-CTR1 155 358 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 437 457 - -
Vvi17g0227 1033 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 123 1001 - -
Vvi17g0227 1033 SMART serkin_6 744 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0227 1033 Gene3D Transferase(Phosphotransferase) domain 1 823 1007 - -
Vvi17g0227 1033 PRINTS Tyrosine kinase catalytic domain signature 857 875 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 PRINTS Tyrosine kinase catalytic domain signature 904 914 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 PRINTS Tyrosine kinase catalytic domain signature 967 989 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 PRINTS Tyrosine kinase catalytic domain signature 818 831 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672|GO:0006468
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 698 729 - -
Vvi17g0227 1033 FunFam Serine/threonine-protein kinase CTR1 823 1006 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 1001 1023 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 1001 1033 - -
Vvi17g0227 1033 MobiDBLite consensus disorder prediction 8 29 - -
Vvi17g0227 1033 ProSitePatterns Protein kinases ATP-binding region signature. 750 772 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0227 Vvi-Chr17 2322153 2341697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0227 1 981 MAP Kinase Kinase Kinase AT1G18160 61.592 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi17g0227 PK_Tyr_Ser-Thr 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0227 - - vvi:100854850 1984.53