Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0219 ATGGGTTACAATGATGGGGGAGAGCTGAATATGCCTGATTCATTCAATGGCAGGAAGCTTCGGCCTCTGATTCCAAGACCAGCTACTTCTACCAGCGGCACTGCAACTACCACGTCTTCTTGTTTAAGCCGCATCCATGGGACTGATCTTTTTGGACTGAATCACCATCTGGAGCAAAGCAACATTAGAGAGTTCAATACAACTCCAGTCATAGTGAGCTCACGTTGGAATCCAACCCCGGAGCAGCTAAGGACCCTAGAAGAATTATATCGGCGCGGGACTCGAACGCCTTCGGCTGAGCAAATTCAGCATATCACCGCACAGCTCCGCCGATACGGCAAGATTGAAGGCAAGAATGTGTTTTACTGGTTTCAGAACCACAAGGCAAGGGAACGGCAGAAGCGGCGCCGACAACTTGAACCAGATGAGCAGAATCGCGATGTTGAAAGCACAGAGAGGAAGGAATCAGGAGGAAGTAGGACAGGTTTTGAAGAACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAGGAATCTCTTTCAATACAAAGGGCAGCAAAAGCAACAGCTGCAGCAGCAGAATGTAGAACAGATGGATGGATCCAATTCGATGAAGGGGAATTACAGCATAGAAGAAGCTTGGTAGAAAGAAATGCCATTTGGCAGATGATGCAGTTGTCTTGTCCTTCTCCCACCACCCACCTCATAAACACGACTACTACTACAAGAACCAAAGAAGCTGCAGCAGTTAGAAGAATGGACCCAAAGTTCATAAAGACTCGAGATCTGAACATCTTTATAGCTCCCTACAGATCAGAAGGTCATAATCACTTGGCCGGTGTCGGCGCCGATCACTCCAATGAAGAAGAGGGTGGAGAATCCCAAACCCTTCAGCTGTTCCCCCTCCGGAGCGGCGATGGCAATGAAAACATTAATGAAAAAGAGGGCGAGATATCAGTTGCTGCCATGAATACCAACCTCACTCCTCACCAGTTTTTTGAGTTCCTTCCACTGAAGAATTAA 1035 0.4754 MGYNDGGELNMPDSFNGRKLRPLIPRPATSTSGTATTTSSCLSRIHGTDLFGLNHHLEQSNIREFNTTPVIVSSRWNPTPEQLRTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQLEPDEQNRDVESTERKESGGSRTGFEEQTKNWALSTNCSILAEESLSIQRAAKATAAAAECRTDGWIQFDEGELQHRRSLVERNAIWQMMQLSCPSPTTHLINTTTTTRTKEAAAVRRMDPKFIKTRDLNIFIAPYRSEGHNHLAGVGADHSNEEEGGESQTLQLFPLRSGDGNENINEKEGEISVAAMNTNLTPHQFFEFLPLKN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0219 344 FunFam WUSCHEL-related homeobox 4 73 140 - -
Vvi17g0219 344 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 63 339 IPR044555 GO:0003700|GO:0099402
Vvi17g0219 344 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Vvi17g0219 344 CDD homeodomain 75 135 IPR001356 GO:0003677
Vvi17g0219 344 Pfam Homeodomain 74 133 IPR001356 GO:0003677
Vvi17g0219 344 SMART HOX_1 71 138 IPR001356 GO:0003677
Vvi17g0219 344 MobiDBLite consensus disorder prediction 1 39 - -
Vvi17g0219 344 Gene3D - 72 134 - -
Vvi17g0219 344 MobiDBLite consensus disorder prediction 132 166 - -
Vvi17g0219 344 MobiDBLite consensus disorder prediction 135 161 - -
Vvi17g0219 344 ProSiteProfiles 'Homeobox' domain profile. 79 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0219 Vvi-Chr17 2230892 2232793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0219 1 344 Wox Gene Family AT3G18010 40.314 8.61e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi17g0219 Homeodomain 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0219 - - vvi:100250993 658.677