Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0214 ATGAATGTGAAGTCTGTGCTTCTGCTCATCTCCTTACTATGGCTAACAACTGCGTCAACAGCTACTCCCTCCATGGCAAAGCAAAACTGCCAAGAACGATGCGGAGATGTTACCATTCCATACCCATTTGGAATAGGGAAAGATTGCTACCTTAATGAGTGGTTTGCAGTCAACTGCAACGATTCTTTTAATCCTCCAACGCCATATTTGAGTCATCCTGAGCTCAATCTGAAGCTGACGTTTGTATCACTGGCTTACCAACTGGTCACTGTTATCAGCCCCATGGCTGTCTACTGTCAAGACCATGACAGGAATAGATCGACATGGAAGGGCATTGATTTGAGTAAAACCCCATTTTTTTACTCAGAAGGTAACGCACTGAGGGTGGTGGGTTGTGCCAATTCGGTCCTGATCACGCGTCAAGGTACCATCTTAGCAGGCTGCTCTTCCATTTGCGATAACAGCTCTAGTGTTCTGAGCAATGGTTGCTACGGGATCAACTGTTGCAAAACCACAGTTCCATCCAATCTTGATTTCTATATTCTGAACACCACATGGAGTACAAATATGGGCACAGAATTGAATTGTACGTATGCTGCCTTCGGTAGAAATTTCATTTTGAGGGGGAAGTCTTCAGGTTCAGGTATGGAATATGAGGCTTCATCGGAGGGAGAAATGATCTGGATGATAAAAGAATCGGTGGAGGGCAGTGATTGTCACAAAAACACAGTCCCTGACGGGGCACTGGGAAATCATTCTTATTATTCTTGCTCCTGTCCGGCTTACCAAGAAGGGAACCCTTATCTACCCAATGGATGCCAAGTTGTTGAAGTATGTGCAAACTGCAAAGGAAGATGTCTAACCAGAATTGACGGTCGTTTCTTCTGCGATGAAAGATCTTTGGCTTCAAAATTTTGGATTCTAGGTATTAGCCTAGGTGGGGGATTGTTGTTTCTACTTCTTGGAGGGTTCTGGTTATATAAAGTTTTAAGGAGAAGGCGAAAGATCAAACTCAGAGAACAGTTCTTCCAGCAACAGTTATTACAACACCAAATGTCTTCTAATGAAATCAGCATTGAGAATACAAAAATATTCACTTTCAATGAATTGAAGAAGGCAAGTGACAACTTCAATGAGAATCGTATTCTTGGTCGTGGAGGTCAAGGAACGGTTTATAAAGGTATGTTGACTGATGGAAGAATCGTAGCCATTAAGAAGTCAAAAATAGTTGATGAGAGTCAATATGAGCAATTCATCAATGAGATTGTGATTCTTTCCCAACTTAATCATAGAAATATAGTAAAGCTATTGGGATGTTGCTTGGAGATAGAAGTTCCCTTATTAGTTTACGAGTTTATCTCGCACGGAACTCTATTTCAGCTTATTCATGATGAAAACAATGAGTTGCCATTTTCTTGGGAAAGGCGCTTGGAGATTGCCACAGAGGTAGCAGGAGCACTTGCTTACTTACATTCTGCCTCTAGTACACCTATTTTTCATAGAGATATCAAGTCTAAAAATATACTCTTAGATGAGAAATATAGAGCAAAAGTGGCAGATTTTGGGACATCGAGGTCTGTTTCCATTGACCAAACTCACTTGACTACTCTTGTGCGAGGGACTTTCGGCTACTTAGATCCAGAATATTTTCGAACAGGACAATTCACTGAAAAAAGTGATGTATATAGTTTTGGAATTGTTTTGGTTGAGCTTTTAACGGGCCAAAAGCCGATTTCTTCAACAAGAACCGAAGAAGAGAGAAGCTTAGCAAGTTATTTTATTTTGTCAATAGAGGAGACAAACTTATTTGATATTCTTGATGCTCAAGTTGTGAAGGAGGGTGGAGAAGAGGAGATAATGGCTGTTGTTAACGTTGCAACACAATGTTTGAATTTGAATGGGAAGAAAAGGCCTACAATGAAGGAAGTAGCCTTAGAGCTAGAGAGGGTCAAATCTCATCTGCCTCTACATGTTCGAGGACATTTTGAATTAGCAGAGTATATTAGAACTGAAATAATTGGGCCTTCGGATTGTGCTTCTTCTTCAACAGGGTCAGGTTTGACATATAGAAATACTCCTTCATTGAATGAAAATTCATCATTTTCTAATACACTATAA 2118 0.4037 MNVKSVLLLISLLWLTTASTATPSMAKQNCQERCGDVTIPYPFGIGKDCYLNEWFAVNCNDSFNPPTPYLSHPELNLKLTFVSLAYQLVTVISPMAVYCQDHDRNRSTWKGIDLSKTPFFYSEGNALRVVGCANSVLITRQGTILAGCSSICDNSSSVLSNGCYGINCCKTTVPSNLDFYILNTTWSTNMGTELNCTYAAFGRNFILRGKSSGSGMEYEASSEGEMIWMIKESVEGSDCHKNTVPDGALGNHSYYSCSCPAYQEGNPYLPNGCQVVEVCANCKGRCLTRIDGRFFCDERSLASKFWILGISLGGGLLFLLLGGFWLYKVLRRRRKIKLREQFFQQQLLQHQMSSNEISIENTKIFTFNELKKASDNFNENRILGRGGQGTVYKGMLTDGRIVAIKKSKIVDESQYEQFINEIVILSQLNHRNIVKLLGCCLEIEVPLLVYEFISHGTLFQLIHDENNELPFSWERRLEIATEVAGALAYLHSASSTPIFHRDIKSKNILLDEKYRAKVADFGTSRSVSIDQTHLTTLVRGTFGYLDPEYFRTGQFTEKSDVYSFGIVLVELLTGQKPISSTRTEEERSLASYFILSIEETNLFDILDAQVVKEGGEEEIMAVVNVATQCLNLNGKKRPTMKEVALELERVKSHLPLHVRGHFELAEYIRTEIIGPSDCASSSTGSGLTYRNTPSLNENSSFSNTL* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0214 705 MobiDBLite consensus disorder prediction 683 705 - -
Vvi17g0214 705 Gene3D Phosphorylase Kinase; domain 1 347 452 - -
Vvi17g0214 705 CDD STKc_IRAK 383 649 - -
Vvi17g0214 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Vvi17g0214 705 ProSiteProfiles Protein kinase domain profile. 377 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0214 705 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247
Vvi17g0214 705 Pfam Protein kinase domain 377 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0214 705 FunFam Wall-associated receptor kinase 2 347 452 - -
Vvi17g0214 705 FunFam Wall-associated receptor kinase 2 453 662 - -
Vvi17g0214 705 SMART serkin_6 377 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0214 705 SUPERFAMILY Protein kinase-like (PK-like) 353 647 IPR011009 -
Vvi17g0214 705 Gene3D Transferase(Phosphotransferase) domain 1 453 659 - -
Vvi17g0214 705 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 651 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0214 Vvi-Chr17 2141294 2144073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0214 2 652 Receptor kinase-like Gene Family AT1G16130 42.816 1.26e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0214 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0214 - - vvi:104882358 1372.07