Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0212 ATGGCATTCTCCACCTTGAAGAAAATGCTCTCCCTTGTTTCCTTGCTCCTATGGATTATGTTGGTTTGTTCAGACAATGTTTCTTCTCATTCTAATGAAGAAACACAAGCTCTGCTCAAATGGAAAGCCACCCTTCTCAACCAAAACCTGCTTTTGTGGAGTCTTCATCCTAACAACATCACAAATTCTTCTGCCCAACCTGGAACAGCAACCAGAACTCCATGCAAATGGTTCGGGATATCTTGCAAGGCAGGAAGTGTAATCAGAATAAACCTCACAGATTTGGGTTTAATCGGTACTCTCCAAGACTTCTCATTCTCGTCTTTTCCTAATCTTGCATATTTTGATATCAACATGAACAAGCTCTCTGGTCCTATCCCACCTCAAATTGGTTTTCTCTCCAAGCTCAAATATCTTGATCTGTCCACCAACCAGTTTTCAGGGAGAATACCGTCGGAAATCGGCCTATTAACTAATCTCGAGGTCCTGCACCTGGTTGAGAATCAGCTGAATGGTTCAATTCCTCATGAAATAGGTCAGTTGAAGTCTCTTTGTGATCTTTCTTTGTACACCAACAAACTGGAGGGAACAATTCCTGCTTCTCTGGGTAATTTGAGCAACTTGACCAATTTGTATCTTGATGAAAATAAACTTTCTGGTTTGATTCCTCCGGAAATGGGAAATCTCACCAAACTTGTTGAGCTATGCTTGAATGCCAACAATCTGACAGGTCCCATCCCTTCTACCTTGGGCAATTTAAAAAGTCTAACTTTGTTGCGCCTCTACAACAATCAACTCTCTGGGCCTATCCCAACAGAAATAGGAAATTTGAAGCACCTCCGGAATCTAAGCCTTTCCAGTAACTATCTTTCAGGTCCAATCCCCATGTCATTAGGTGATCTGAGTGGCCTAAAATCTCTGCAGCTCTTTGATAATCAACTTTCTGGCCCCATTCCTCAAGAAATGGGAAACTTGAGATCTCTTGTTGACCTAGAAATATCCCAAAATCAACTCAATGGTTCCATTCCTACTTTACTGGGTAATTTGATCAACTTAGAAATTTTATACCTCCGTGATAACAAACTTTCTAGTTCCATTCCTCCAGAAATTGGGAAACTTCATAAGTTGGTTGAGCTAGAAATAGACACGAACCAGCTATCTGGTTTTTTACCAGAAGGCATATGCCAAGGTGGATCTCTGGAGAACTTCACGGTGTTTGACAATTTTCTCATTGGGCCCATCCCCGAAAGCTTGAAAAATTGCCCAAGCTTAGCCAGAGCTCGGCTTCAGGGAAACCAACTCACTGGAAATATATCCGAGGCATTTGGGGTCTGTCCAAACCTGTATCACATCAACTTGAGCAACAACAAGTTCTATGGGGAACTTTCTCAAAATTGGGGAAGGTGTCACAAACTACAATGGCTAGACATTGCCGGGAATAATATCACAGGGAGCATACCAGCAGATTTTGGAATCTCAACTCAACTAACCGTGCTTAATCTTTCTTCAAATCATTTGGTTGGGGAAATTCCAAAGAAGTTGGGAAGTGTATCGTCTCTGTGGAAGCTGATTTTGAATGATAACCGACTTTCCGGGAATATACCACCTGAACTTGGATCGCTTGCTGACCTTGGGTATCTAGACCTGTCAGGAAATAGATTGAATGGGTCAATACCAGAGCACTTGGGTAACTGCTTGGACTTGAATTACTTGAACCTGAGCAACAACAAACTCAGCCACGGAATTCCGGTTCAGATGGGCAAGCTCAGTCACCTCTCCCTGCTTGATCTGAGTCACAACTTACTTACAGGTGAAATCCCATCACAAATCCAAGGTTTGCAGAGCTTAGAGAAGCTTAATCTATCCCATAACAACCTATCTGGTATCATTCCAAAGGCTTTTGAGGATATGCATGGCTTGTGGCAAGTCGACATATCTTACAATGATTTGCAGGGTTCCATTCCCAACAGCGAAGCATTTCAGAATGTTACCATTGAAGTGTTGCAGGGAAACAAAGGTTTGTGTGGTAGCGTTAAAGGGTTACAACCTTGCGAAAATCGTTCTGCAACAAAGGGTACTCATAAAGCTGTATTCATAATCATATTCTCTCTTTTGGGAGCACTTCTAATTCTTTCTGCTTTCATTGGGATTTCCTTGATTTCTCAAGGAAGAAGAAATGCAAAAATGGAGAAGGCCGGTGATGTACAGACTGAAAATCTCTTCTCAATCTCGACTTTTGATGGAAGAACAACGTATGAAGCAATCATAGAGGCGACCAAGGATTTTGATCCCATGTATTGCATCGGAGAGGGAGGACATGGAAGCGTATACAAAGCAGAGCTGCCGTCAGGTAACATAGTAGCTGTGAAGAAGCTTCACCGATTCGACATTGACATGGCACATCAAAAGGATTTCGTGAATGAAATAAGAGCATTGACAGAGATAAAGCATCGAAATATCGTGAAGCTTCTGGGTTTCTGCTCACATTCACGACACTCATTTCTGGTATACGAGTACCTGGAACGAGGGAGCTTGGGTACAATCTTGAGCAAAGAATTACAAGCTAAGGAAGTGGGTTGGGGTACAAGGGTAAACATTATTAAAGGGGTGTCTCATGCTTTGTCTTACCTGCACCATGATTGTGTGCCTCCAATTGTTCATCGAGACATATCAAGCAATAATGTTCTGCTGGATTCTAAATATGAGGCCCATGTATCCGACTTTGGCACTGCTAAGTTTCTGAAGCTAGACTCATCAAACTGGAGCACTCTTGCAGGCACATATGGATATGTCGCACCAGAGCTTGCTTACACGATGAAGGTAACCGAGAAATGCGATGTCTACAGCTTTGGAGTGCTGGCACTTGAAGTGATGAGAGGAAGACATCCTGGAGATCTTATCTCCTCTCTATCAGATTCACCAGGGAAGGATAACGTAGTGTTGAAAGATGTGTTAGATCCTCGACTCCCACCTCCCACATTCCGAGACGAAGCAGAAGTGACGTCTGTCATACAGCTCGCAACTGCATGCTTAAACGGCAGCCCACAATCTAGGCCGACCATGCAGATGGTTTCTCAGATGTTGTCACAAAGGATTTAA 3099 0.4285 MAFSTLKKMLSLVSLLLWIMLVCSDNVSSHSNEETQALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCKAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGTIPASLGNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTLLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLARARLQGNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKAVFIIIFSLLGALLILSAFIGISLISQGRRNAKMEKAGDVQTENLFSISTFDGRTTYEAIIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLHRFDIDMAHQKDFVNEIRALTEIKHRNIVKLLGFCSHSRHSFLVYEYLERGSLGTILSKELQAKEVGWGTRVNIIKGVSHALSYLHHDCVPPIVHRDISSNNVLLDSKYEAHVSDFGTAKFLKLDSSNWSTLAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVMRGRHPGDLISSLSDSPGKDNVVLKDVLDPRLPPPTFRDEAEVTSVIQLATACLNGSPQSRPTMQMVSQMLSQRI* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0212 1032 FunFam MDIS1-interacting receptor like kinase 2 840 1032 - -
Vvi17g0212 1032 FunFam Nuclear pore complex protein NUP107 31 198 - -
Vvi17g0212 1032 FunFam Leucine-rich repeat receptor protein kinase MSP1 724 839 - -
Vvi17g0212 1032 SUPERFAMILY L domain-like 58 411 - -
Vvi17g0212 1032 SMART LRR_typ_2 253 277 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 301 325 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 133 156 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 373 397 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 349 372 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 205 229 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 541 565 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 589 612 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 613 636 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 494 517 IPR003591 -
Vvi17g0212 1032 SMART LRR_typ_2 157 181 IPR003591 -
Vvi17g0212 1032 Gene3D Transferase(Phosphotransferase) domain 1 840 1032 - -
Vvi17g0212 1032 Pfam Leucine rich repeat 446 506 IPR001611 GO:0005515
Vvi17g0212 1032 Pfam Leucine rich repeat 590 650 IPR001611 GO:0005515
Vvi17g0212 1032 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 199 294 - -
Vvi17g0212 1032 ProSitePatterns Protein kinases ATP-binding region signature. 768 791 IPR017441 GO:0005524
Vvi17g0212 1032 Gene3D Ribonuclease Inhibitor 30 198 IPR032675 -
Vvi17g0212 1032 ProSiteProfiles Protein kinase domain profile. 762 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0212 1032 Pfam Protein kinase domain 767 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0212 1032 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 394 688 - -
Vvi17g0212 1032 SMART LRR_sd22_2 589 615 - -
Vvi17g0212 1032 SMART LRR_sd22_2 205 223 - -
Vvi17g0212 1032 SMART LRR_sd22_2 157 189 - -
Vvi17g0212 1032 SMART LRR_sd22_2 349 381 - -
Vvi17g0212 1032 SMART LRR_sd22_2 277 303 - -
Vvi17g0212 1032 SMART LRR_sd22_2 229 255 - -
Vvi17g0212 1032 Gene3D Ribonuclease Inhibitor 294 393 IPR032675 -
Vvi17g0212 1032 FunFam MDIS1-interacting receptor like kinase 2 isoform A 295 393 - -
Vvi17g0212 1032 Gene3D Ribonuclease Inhibitor 199 293 IPR032675 -
Vvi17g0212 1032 SUPERFAMILY Protein kinase-like (PK-like) 741 1028 IPR011009 -
Vvi17g0212 1032 Gene3D Ribonuclease Inhibitor 394 688 IPR032675 -
Vvi17g0212 1032 PANTHER LEUCINE RICH REPEAT KINASE 2 15 352 - -
Vvi17g0212 1032 ProSitePatterns Tyrosine protein kinases specific active-site signature. 885 897 IPR008266 GO:0004672|GO:0006468
Vvi17g0212 1032 ProSiteProfiles Leucine-rich repeat profile. 615 636 IPR001611 GO:0005515
Vvi17g0212 1032 Gene3D Phosphorylase Kinase; domain 1 722 839 - -
Vvi17g0212 1032 SUPERFAMILY RNI-like 342 659 - -
Vvi17g0212 1032 PRINTS Leucine-rich repeat signature 613 626 - -
Vvi17g0212 1032 PRINTS Leucine-rich repeat signature 544 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0212 Vvi-Chr17 2103373 2106562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0212 13 933 Receptor kinase-like Gene Family AT4G08850 52.575 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi17g0212 Pkinase 5.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0212 - - vvi:109124293 1999.17