Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0210 ATGGCATCCTCAACCTTACAGAAAATGCTCTCCCTTGTTTCCTTGCTCCTCTTGGTTATGTTGATTTCTTCAGACCATGTTTCTTCTTATTCTAATGAAGAAACACAAGCTCTTCTCAAATGGAAAGCTAGCCTTCAAAACCACAACCATTCTTCCCTCCTTTCGTGGGATCTTTATCCTAACAACTCCACCAATTCTTCTACCCACCTTGGAACGGCAACCAGTCCATGCAAATGGTATGGGATATCCTGCAACCATGCGGGAAGTGTCATCAAAATAAACCTCACAGAGTCGGGTTTAAATGGTACGCTCATGGACTTCTCATTCTCATCTTTTCCTAATCTTGCATATGTTGATATCAGCATGAACAACCTCTCTGGTCCTATCCCACCCCAAATCGGTCTCCTCTTCGAGCTCAAATACCTTGATCTGTCCATCAACCAGTTCTCAGGAGGGATTCCGTCAGAAATTGGCCTATTAACTAATCTTGAGGTCCTGCACCTGGTTCAAAATCAGCTCAATGGTTCAATTCCTCATGAAATAGGTCAGTTGGCATCTCTTTATGAGCTTGCTTTGTACACCAACCAACTGGAGGGTTCTATTCCTGCTTCTTTGGGTAATTTGAGCAACTTGGCCTCTTTGTATCTCTATGAAAATCAACTTTCGGGTTCCATTCCTCCAGAAATGGGAAATCTCACCAACCTTGTTGAGATATACTCGAATAACAACAATCTCACAGGTCCCATCCCTTCCACTTTTGGAAATTTGAAACGTTTAACCGTGTTGTACTTGTTCAACAATAGCCTCTCTGGGCCTATCCCACCAGAAATAGGAAATTTGAAATCCCTGCAAGAGCTAAGCCTCTACGAAAACAATCTTTCTGGTCCAATCCCTGTGTCATTATGTGATCTGAGTGGCCTAACCCTCCTGCATCTCTATGCCAATCAACTTTCCGGTCCCATTCCTCAAGAAATAGGAAACTTGAAGTCTCTTGTTGATCTAGAACTTTCTGAAAATCAACTCAATGGTTCCATTCCTACTTCACTGGGTAATCTAACCAATTTAGAAATTTTATTCCTCCGTGATAATCAACTTTCTGGTTACATTCCTCAAGAAATTGGGAAACTTCATAAGTTGGTTGTGCTAGAAATCGACACAAACCAGCTGTTTGGCTCTTTACCGGAAGGCATTTGCCAAGCTGGATCTCTGGTGCGCTTTGCAGTGAGTGACAACCATCTCAGTGGTCCCATCCCCAAAAGCTTGAAAAATTGCAGAAACTTAACCAGAGCTCTGTTCCAGGGAAACCGACTCACTGGAAATATATCTGAGGTAGTTGGTGACTGTCCAAACCTGGAATTCATCGATTTGAGCTACAACAGGTTTCATGGTGAACTCTCTCATAACTGGGGAAGATGCCCACAACTACAAAGGCTGGAGATTGCCGGGAACAATATTACAGGGAGCATACCAGAAGATTTTGGAATCTCAACTAATCTAACCTTGCTTGATCTTTCTTCAAATCATTTGGTTGGGGAAATTCCAAAGAAAATGGGAAGTTTAACTTCTCTGTTGGGGCTCATATTGAATGACAACCAACTTTCCGGGAGTATTCCTCCTGAACTTGGATCGCTGTCCCACCTTGAGTATCTAGACCTTTCAGCCAATAGATTGAATGGGTCAATACCAGAGCACTTGGGCGACTGCTTGGACTTGCATTACTTGAACCTGAGCAATAACAAACTCAGCCACGGAATTCCGGTTCAGATGGGTAAGCTGAGTCACCTCTCCCAGCTAGATCTGAGTCACAACTTGCTTGCAGGTGGCATCCCGCCACAGATCCAAGGTTTGCAAAGCTTGGAGATGCTTGATCTCTCCCATAACAACCTTTGTGGTTTCATCCCAAAGGCTTTTGAGGACATGCCTGCCTTGTCGTATGTTGACATATCCTACAATCAGTTGCAGGGTCCCATTCCTCACAGCAATGCATTTCGAAATGCTACCATTGAGGTGCTAAAGGGGAACAAAGATTTGTGCGGCAATGTTAAAGGGTTGCAACCTTGCAAATATGGTTTTGGAGTAGACCAACAACCTGTCAAAAAGAGCCACAAAGTTGTGTTTATTATCATATTCCCTCTTTTGGGAGCACTTGTACTTCTTTTTGCTTTCATTGGGATTTTCTTGATTGCTGAAAGAAGAGAGAGAACTCCAGAAATCGAAGAAGGTGACGTACAGAATGATCTCTTTTCAATATCAAATTTTGATGGAAGAACAATGTATGAAGAGATTATAAAGGCCACCAAGGATTTTGATCCCATGTATTGCATAGGAAAGGGAGGCCATGGAAGTGTTTACAAAGCAGAGCTGCCATCAAGTAATATAGTAGCTGTGAAGAAGCTTCACCCATCCGACACAGAGATGGCAAATCAAAAGGATTTCTTAAATGAAATAAGGGCACTAACAGAAATCAAGCATCGAAACATAGTGAAACTTCTTGGTTTCTGTTCACATCCACGACACAAGTTTTTGGTCTACGAGTACCTTGAAAGAGGTAGCCTGGCTACAATCTTGAGCAGAGAAGAAGCTAAGAAATTGGGTTGGGCTACAAGGGTCAATATCATTAAAGGAGTGGCTCATGCTTTGGCTTACATGCACCATGATTGCTCACCCCCTATTGTTCATCGGGATGTATCAAGCAACAATATTCTGCTGGATTCTCAGTATGAAGCTCATATTTCTGACTTCGGCACTGCCAAGCTTCTAAAGCTAGACTCATCGAATCAGAGCATACTTGCAGGCACATTCGGATATCTTGCACCAGAGCTTGCTTATACAATGAAGGTGACCGAAAAAACTGATGTCTTTAGCTTTGGAGTAATAGCACTGGAAGTTATCAAAGGAAGACATCCTGGAGATCAGATCTTGTCTCTATCAGTTTCCCCAGAGAAGGATAACATAGCGTTGGAAGACATGTTGGACCCCCGACTCCCACCTCTCACACCCCAGGATGAGGGGGAAGTGATAGCTATCCTAAAGCAAGCAATTGAATGCTTAAAAGCCAACCCGCAATCCAGGCCAACCATGCAGACTGTTTCTCAGATGTTATCACAGAGAAAGTAG 3117 0.4305 MASSTLQKMLSLVSLLLLVMLISSDHVSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNHAGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSINQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLYLFNNSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISEVVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLAGGIPPQIQGLQSLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAERRERTPEIEEGDVQNDLFSISNFDGRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSSNIVAVKKLHPSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEYLERGSLATILSREEAKKLGWATRVNIIKGVAHALAYMHHDCSPPIVHRDVSSNNILLDSQYEAHISDFGTAKLLKLDSSNQSILAGTFGYLAPELAYTMKVTEKTDVFSFGVIALEVIKGRHPGDQILSLSVSPEKDNIALEDMLDPRLPPLTPQDEGEVIAILKQAIECLKANPQSRPTMQTVSQMLSQRK* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0210 1038 Gene3D Ribonuclease Inhibitor 300 396 IPR032675 -
Vvi17g0210 1038 SUPERFAMILY RNI-like 367 658 - -
Vvi17g0210 1038 Gene3D Transferase(Phosphotransferase) domain 1 847 1038 - -
Vvi17g0210 1038 PANTHER LEUCINE RICH REPEAT KINASE 2 13 358 - -
Vvi17g0210 1038 FunFam LRR receptor-like serine/threonine-protein kinase 302 377 - -
Vvi17g0210 1038 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Vvi17g0210 1038 ProSiteProfiles Protein kinase domain profile. 769 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0210 1038 Gene3D Ribonuclease Inhibitor 30 195 IPR032675 -
Vvi17g0210 1038 CDD STKc_IRAK 775 1036 - -
Vvi17g0210 1038 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 201 299 - -
Vvi17g0210 1038 Pfam Protein kinase domain 774 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0210 1038 SUPERFAMILY L domain-like 73 391 - -
Vvi17g0210 1038 Pfam Leucine rich repeat N-terminal domain 32 85 IPR013210 -
Vvi17g0210 1038 SMART LRR_typ_2 616 639 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 208 232 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 520 543 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 376 400 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 304 328 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 256 280 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 160 184 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 352 375 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 640 665 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 544 568 IPR003591 -
Vvi17g0210 1038 SMART LRR_typ_2 592 615 IPR003591 -
Vvi17g0210 1038 FunFam Leucine-rich repeat receptor protein kinase MSP1 731 846 - -
Vvi17g0210 1038 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 378 690 - -
Vvi17g0210 1038 SUPERFAMILY Protein kinase-like (PK-like) 754 1034 IPR011009 -
Vvi17g0210 1038 Pfam Leucine rich repeat 545 605 IPR001611 GO:0005515
Vvi17g0210 1038 Pfam Leucine rich repeat 613 653 IPR001611 GO:0005515
Vvi17g0210 1038 Gene3D Phosphorylase Kinase; domain 1 734 846 - -
Vvi17g0210 1038 SMART LRR_sd22_2 496 522 - -
Vvi17g0210 1038 SMART LRR_sd22_2 544 559 - -
Vvi17g0210 1038 SMART LRR_sd22_2 592 618 - -
Vvi17g0210 1038 SMART LRR_sd22_2 280 306 - -
Vvi17g0210 1038 SMART LRR_sd22_2 352 378 - -
Vvi17g0210 1038 SMART LRR_sd22_2 160 186 - -
Vvi17g0210 1038 SMART LRR_sd22_2 208 234 - -
Vvi17g0210 1038 Gene3D Ribonuclease Inhibitor 196 299 IPR032675 -
Vvi17g0210 1038 PRINTS Leucine-rich repeat signature 616 629 - -
Vvi17g0210 1038 PRINTS Leucine-rich repeat signature 547 560 - -
Vvi17g0210 1038 Gene3D Ribonuclease Inhibitor 397 689 IPR032675 -
Vvi17g0210 1038 ProSitePatterns Tyrosine protein kinases specific active-site signature. 891 903 IPR008266 GO:0004672|GO:0006468
Vvi17g0210 1038 FunFam MDIS1-interacting receptor like kinase 2 847 1038 - -
Vvi17g0210 1038 FunFam Nuclear pore complex protein NUP107 31 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0210 Vvi-Chr17 2091068 2094257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0210 7 939 Receptor kinase-like Gene Family AT4G08850 52.798 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi17g0210 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0210 - - vvi:100243949 2030.76