Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0208 ATGTACAGTTGTTTTAACCATGTTGTTTCTCATTCTAAGAAGACACAAACTCTACTCCAATGGAAAGCCAGCCATAGAAAACAAAGCCATCCTCAAGGTGATGTACAAAATAATCTCCTCTCAATATCAACTTTTGATGGAAGAACAATGTATGAAGAGATTACAAAGGCCACCAAGGATTTTGATCCCATGTATTGCATCGGAAAAGGTGGGCATGGAAGGGTTTACAAGGCAGAGCTGTCCTCAGGTAATATTGTAGCTGTGAAAAAGCTTTACCCATCCGACATAGATACGGCAAATCAAAGGGACTTCTTCAATGTAGTAAGGGCACTGACAGAAATCAAGCATCGAAACATTGTGAGACTTCTTGGTTTCTGTTCACATCCACGACACTTCTTTTTGCCTCATATTTCTGACTTCAGCATTGCCAAGCTTCTAAAGCTAGACTCATCAAATCAGAGCGCACTTGCAGGCACATTCGGATACGTTACACCAGAACATGCTTATACACTGAGGGTGACAAAAAAAACCGATGTCTATAGTTTTGGAGTGATAGCTCTGGAAGTTATCAAAGGAAGACATCCTGGAGATCAGATCTTGTCTCTATCAGTTTCCCCACAGAAGGAGAACATAGTGTTAGAAGATATGTTGGACCCGCGACTCCCACCTCTTATAGCCCAAGATGAAGGGGAAGTGATATCTATCATAAAGCTCGTAACTGCATGCTTAAATGTCAACCCACAGTCCAGGCCAACTATGAAGATTATTTCTCAGATGTTATCACAGAGAATTTAG 795 0.4113 MYSCFNHVVSHSKKTQTLLQWKASHRKQSHPQGDVQNNLLSISTFDGRTMYEEITKATKDFDPMYCIGKGGHGRVYKAELSSGNIVAVKKLYPSDIDTANQRDFFNVVRALTEIKHRNIVRLLGFCSHPRHFFLPHISDFSIAKLLKLDSSNQSALAGTFGYVTPEHAYTLRVTKKTDVYSFGVIALEVIKGRHPGDQILSLSVSPQKENIVLEDMLDPRLPPLIAQDEGEVISIIKLVTACLNVNPQSRPTMKIISQMLSQRI* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0208 264 PANTHER LEUCINE RICH REPEAT KINASE 2 135 262 - -
Vvi17g0208 264 SUPERFAMILY Protein kinase-like (PK-like) 36 260 IPR011009 -
Vvi17g0208 264 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Vvi17g0208 264 Gene3D Transferase(Phosphotransferase) domain 1 133 263 - -
Vvi17g0208 264 FunFam Leucine-rich repeat receptor protein kinase MSP1 23 136 - -
Vvi17g0208 264 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0208 264 Pfam Protein kinase domain 66 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0208 264 Pfam Protein kinase domain 137 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0208 264 Gene3D Phosphorylase Kinase; domain 1 19 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0208 Vvi-Chr17 2047663 2049008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0208 22 149 Receptor kinase-like Gene Family AT4G08850 46.269 4.16e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi17g0208 Pkinase 2.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0208 - - vri:117934482 324.709