Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0202 ATGGGGAAGCAGAAACTGAAGACACGTGTAATGAAAAAGAATGTTAATCCTGAGTGGAATGAAGATCTAACTCTTTCTATTTCAGATCCTAATCTTCCAATCAAGCTGACCGTGTATGACCATGACACATTCAGCAAAGATGACAAGATGGGAGATGCAGAATTCACCATCAATCCATATCTAGAAGCTTTACGGATGCATTTGGAAGGTCTCCCCAGTGGTACCATAATTTCAAGAGTACAACCGAGCAGGCAAAACTGCCTGGCAGAGGAGAGCTGCATTGTCTGGACCGATGGCAGGGTTGTCCAAGACATCTGCCTCAGATTGCGAAATGTTGAATGTGGTGAAGTAGAACTCCAACTGCAATGGATCGACCTTCCGGGTTCCAAGGGCCTATAG 399 0.4511 MGKQKLKTRVMKKNVNPEWNEDLTLSISDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNCLAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0202 132 ProSiteProfiles C2 domain profile. 1 70 IPR000008 -
Vvi17g0202 132 Gene3D C2 domain 1 130 IPR035892 -
Vvi17g0202 132 Pfam C2 domain 2 59 IPR000008 -
Vvi17g0202 132 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 126 IPR035892 -
Vvi17g0202 132 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 130 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0202 Vvi-Chr17 1966859 1969611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0202 5 132 C2H2 Transcription Factor Family AT1G70790 61.538 3.87e-54 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0202 - - vvi:100261135 274.633