Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0196 ATGGAGAGAGATTTCTTGTGTTTGGGGTCGGGGAAAGTTTTGCCATCGGGGAAGGAGGAATCCGGTGATTCAGTGCCTGCTAGAGGGTTGGGGATGCAGTGGCCCTTCCCCAACAAGGTTTCAGCCATTCCTCATTTTCTGTCCTTTAAGGCAGTTCAAGAAGATAGGCCTAGAAGGAGTGTGTATGATCGTCCCTTTGCATCATCTGGGCTAATGTCTGTATCCACTGCAGATGCACTTGAATCTAACCAGCAACCACACCCTGGTGTTTTGCAGAAAAATTTGAATCTTGAAAAGCAAGTGGGAAGCCAGTTTGTAATGACAGGCTATCCTCTTCAACACTTAGATGCACGGTCAGTCCGCCGTGCTCATGAAGTCGGGAAATTCCCAGCCTCCAACCAACCAAACCATTCCATTTCTGTTGCTTTTAGCAACCCAGTTCTCCAATCTCAAATTGCTTTCAGTGGACCCAGTGTGGGCAGTTCTGCTGTAAAGCCACAGCCTCTTGGAGGCGTTCCAGTAGCAGCCCCTGGTTCCTATCCTACCATCTGTTCCTTCATTGGTACTACTGATCAAAAGAATGCTTCCAAGCCCCCTGGGCCAGCTACTCAGCTGACTATCTTTTATGCCGGTTCAGTGAATGTTTTTGATGGCATCTCTCCTGAGCAGGCTCAGGCTATTATGTTATTGGCTGGAAATGTCCCTCCTGTAAGTCCCAATACTACACTTCCCGCATCTCAAGGACAGGGACCGATCATAATGCCCTCTGGAGGTGATGGTTTTATGGGGAACCAAGCTCATACTTCACAACCTGGCTCAGGTCTTCCAACCCTTATTTCTGCTTCATCTAATGTTGGCTCTCAGCCAGGGGGAGGACCTAATAGCATTGATGAGTTGATGGCAGGGAAAACAAAAGGAGCTTTGACATCTACCAACCAACCAGAGCCTCCCAACGTAGTCACTTCACTAGGATCCACTACTCCAACCTATATTCCAGCAGTACCTCAGGCTCGTAAAGCATCATTGGCTAGATTTTTAGAGAAGCGCAAAGAGAGGATGATGAGCGCATCGCCCTATAATGGCAGCACCCCTGCATCAAATGTTGTTGGTTTCTCCATGAATTCTGCACTCTGCTAG 1137 0.482 MERDFLCLGSGKVLPSGKEESGDSVPARGLGMQWPFPNKVSAIPHFLSFKAVQEDRPRRSVYDRPFASSGLMSVSTADALESNQQPHPGVLQKNLNLEKQVGSQFVMTGYPLQHLDARSVRRAHEVGKFPASNQPNHSISVAFSNPVLQSQIAFSGPSVGSSAVKPQPLGGVPVAAPGSYPTICSFIGTTDQKNASKPPGPATQLTIFYAGSVNVFDGISPEQAQAIMLLAGNVPPVSPNTTLPASQGQGPIIMPSGGDGFMGNQAHTSQPGSGLPTLISASSNVGSQPGGGPNSIDELMAGKTKGALTSTNQPEPPNVVTSLGSTTPTYIPAVPQARKASLARFLEKRKERMMSASPYNGSTPASNVVGFSMNSALC* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0196 378 Pfam Jas motif 335 359 IPR018467 -
Vvi17g0196 378 SMART tify_2 198 233 IPR010399 -
Vvi17g0196 378 ProSiteProfiles Tify domain profile. 198 233 IPR010399 -
Vvi17g0196 378 Pfam tify domain 202 232 IPR010399 -
Vvi17g0196 378 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 127 365 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0196 Vvi-Chr17 1857595 1861330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0196 32 377 Tify Gene Family AT3G17860 37.396 2.47e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi17g0196 tify 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0196 K13464 - vvi:100245759 758.059