Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0194 ATGGCGAAGGTCAGTAGGACGGGGAGAAACAGAAACCTGGAAACCCTGCTGGTCATGGACAAGTCGGTGAAAATTGAGAACCAGGCTGTCACGCATGAACCCCGGAAAATGATTCCAGGCCAAGGACTGGAGTTTAGTAACCTTTCCTATAGTGTGCCGAAGCAGCAGAAGAAGGATGGCGCGACAATCACCAAAGAAGTTTACCTTCTTAATGATCTTTCTGGCCAGGCAGTTAGAGGTGAAATCATGGCCATCTTGGGGCCTAGCGGGGCTGGAAAATCCACGTTTCTGGACGCCTTGGCTGGGAGGATTGCTCGTGGAAGTCTTGAGGGGTCTGTCAAAATCAATGGAAAGCCGGTTTCCGCAAGCTATATGAAGATGGTTTCTTCTTATGTAATGCAAGATGATCAGCTCTTTGCCATGTTGACAGTCTTTGAGACCCTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCAATTTCCAGATCAGAGAAGAGAAAACGAGTTTTCGAGCTCATTGATCAACTGGGCTTACAGAGTGCAACCCATACATATATCGGCAATGAAGGCAGACGGGGAGTGTCCGGTGGAGAGCGGCGGAGAGTATCTATAGGGATTGATATAATCCACAAGCCACCGCTGCTGTTCCTGGATGAACCCACCTCCGGTCTGGACTCTACAAGCGCTTACAGTGTGGTGGAAAAGGTTCAGGACATTGCAAGAAGTGGTAGCATTGTCCTCATGACCATACACCAACCATCTTTCAGAATCCAGATGCTCCTCGACCGTATCACAGTCCTAGCAAGGGGCAGACTGATATATACTGGAAGACCAACTGATCTTCCTACCTACCTCTCTGCATTCGGAAGACCAGTTCCAGATGGTGAGAACAGCCTTGAATATCTCCTGGATGTGATCAAAGAGTATGATGAATCAACCATAGGAGTTGATCCTCTTGTTCTGTACCAGCGGGATGGCATCAAGCCTGATCAAGTGGCAAGAACCCCTATTCCAAAAACACCCAAGACCCCCAACACTCCTTACAGAAAGACTCCTGCATCACAGCTTTTCAGTCTCCGAAGCCAACCATTTTCGACTGGGAATTCGACTCCTCGGCTAGATGCTCATTACAATGATGATGACGATGATGATTTTGACAACTCCCTTGAAAGAAAAATCGCAACACCAAAGCATTTTCATGGTAGTGCTGCTTATAATCCACGATTGGCTTCTCATTTCTACAAGGACTTCCCGGTTTGGCTCTATAATGGTGTCAAGGGGACCCCTCGTCGTCCACCTACATGGACTCCGGCAAGAACTCCAGGCCGAACACCTGGAAAAACACCCATGGCCGGCCCAAGAAGATATGTTTCAAGCCGGTACTCATTACCTCAGCAGACACCTGCCCACGTAAAAACTCCAGTGTTCAGCCCTTCTGCAGAAACATATGAAGCTTCCTATGAGTTGGAGATGGAAGTACTAGATGAGCCAGAACACAGGGCCAAATTTGCAAATCCATGGCTTCGCGAAGTAGCAGTACTGTCATGGCGGAACATACTCAATATCATCCGCACCCCAGAGCTCTTCCTCTCCCGTGAGATCGTTCTGTTGGTTATGGCTCTCATCCTCTCTTCTCTCTTCCCAAACCTGGGAGACGATAGCTTGAAGACAGTGAACCGGCTTCTTAATTTCTATATCTTTGCAGTCTGTCTTGTCTTCTTCTCTTCCAATGATGCCGTTCCAACCTTCATCCAAGAGCGATTTATCTTCATGAGAGAAACAGCCCACAATGCATACCGGGCTTCTTCTTACGTCGTATCGTCCCTCATTGTCTACCTCCCGTTTTTTGCCATTCAGGGCCTCACGTTTGCCATGATCACCCGGTATATACTCCACCTGAAAAGCGACGTCATCTTCTTCTGGCTAATCCTTTATGCATCACTCATCACCACAAATGCTTATGTGATGCTTGTTAGCGCACTGGTGCCAAGCTACATCACAGGTTATGCTGTCGTCATTGCCACCACTGCTCTTTTCTTCCTATCTTGTGGGTTCTTCTTGAAGCGAACTAAAATACCCAACTACTGGATCTGGCTCCATTACATATCTGCAATCAAATACCCATTTGAAGCATTACTGATAAATGAGTTCCAAGGCACCCGCTGCTACAAGGGATCTCCTGCTGATCTTTCGCCAGGCCCTCTTGGTAACTTGAACTACAGCCCAGAGCACAACAAATTTGTATCAATAAACTGCACATTGATAGGTGATGATATTCTGTCCTCCATGGATCTTCAGTTGAAGAACATTTGGTATGATATTGCTATCCTGTTGGGGTGGGGAGTTCTTTACCGCCTCTTCTTCTACGTGGTTCTGAGATTTTACTCCAAGAATGAGAGGAAATGA 2406 0.4722 MAKVSRTGRNRNLETLLVMDKSVKIENQAVTHEPRKMIPGQGLEFSNLSYSVPKQQKKDGATITKEVYLLNDLSGQAVRGEIMAILGPSGAGKSTFLDALAGRIARGSLEGSVKINGKPVSASYMKMVSSYVMQDDQLFAMLTVFETLMFAAEVRLPPSISRSEKRKRVFELIDQLGLQSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPPLLFLDEPTSGLDSTSAYSVVEKVQDIARSGSIVLMTIHQPSFRIQMLLDRITVLARGRLIYTGRPTDLPTYLSAFGRPVPDGENSLEYLLDVIKEYDESTIGVDPLVLYQRDGIKPDQVARTPIPKTPKTPNTPYRKTPASQLFSLRSQPFSTGNSTPRLDAHYNDDDDDDFDNSLERKIATPKHFHGSAAYNPRLASHFYKDFPVWLYNGVKGTPRRPPTWTPARTPGRTPGKTPMAGPRRYVSSRYSLPQQTPAHVKTPVFSPSAETYEASYELEMEVLDEPEHRAKFANPWLREVAVLSWRNILNIIRTPELFLSREIVLLVMALILSSLFPNLGDDSLKTVNRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFMRETAHNAYRASSYVVSSLIVYLPFFAIQGLTFAMITRYILHLKSDVIFFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLSCGFFLKRTKIPNYWIWLHYISAIKYPFEALLINEFQGTRCYKGSPADLSPGPLGNLNYSPEHNKFVSINCTLIGDDILSSMDLQLKNIWYDIAILLGWGVLYRLFFYVVLRFYSKNERK* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0194 801 MobiDBLite consensus disorder prediction 331 350 - -
Vvi17g0194 801 MobiDBLite consensus disorder prediction 360 382 - -
Vvi17g0194 801 MobiDBLite consensus disorder prediction 431 452 - -
Vvi17g0194 801 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 787 - -
Vvi17g0194 801 Pfam ABC-2 type transporter 511 717 IPR013525 GO:0016020|GO:0140359
Vvi17g0194 801 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 294 IPR003439 GO:0005524
Vvi17g0194 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 285 IPR027417 -
Vvi17g0194 801 SMART AAA_5 79 279 IPR003593 GO:0016887
Vvi17g0194 801 CDD ABCG_EPDR 40 276 - -
Vvi17g0194 801 Gene3D - 42 286 IPR027417 -
Vvi17g0194 801 Pfam ABC transporter 70 222 IPR003439 GO:0005524
Vvi17g0194 801 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Vvi17g0194 801 FunFam ABC transporter G family member 6 58 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0194 Vvi-Chr17 1830227 1832876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0194 43 375 Calmodulin-binding Proteins AT2G36910 24.128 1.28e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0194 K05681 - vvi:100266434 1530.38