Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0190 ATGGCATCAATGAAGCTGCAAAAGAGATTAGCTGCCTGTCTTCTCCATTGTGGTCAAGGAAAAGTGTGGCTTGACCCTAATGAGATCTCTAATATCTCCCTTGCCAATTCAAGGACAGACATAAGAAAGCTGGTAAAGGATGGTTTCGTCATCAAGAAACCAAGCAAGACACACTCAAGAGGCCGTGCACGGCGCTCCCTCGAAGGGAAAGCAAAAGGGAGGCATTCAGGGGAGGGGAAGCGCAAGGGAACAAGAGAGGCCAGGCTGCCATCGAAGGTGGTGTGGATGAGGAAGCTGAGGGTGTTGCGCCGCCTGCTCCGCAAGTACCGGGAATTGGAGAAGATCGATAGGCATGTCTACCATGAGATGTACATGAAGGCGAAGGGAAATACCTTCAAGAACAAGCGTGCTCTTATGGAGACTATTCACAAGTTGAAGGCCGAAAGAGCAAGAGAGAAAGTGATTTCTCATCAGTTTGAGACCAAGAGGAAGGCTGCAATGCATCACAGAAGATGGTCGGTAAACAATAATGAATGCAAGTTGTGTGTTTGA 552 0.4837 MASMKLQKRLAACLLHCGQGKVWLDPNEISNISLANSRTDIRKLVKDGFVIKKPSKTHSRGRARRSLEGKAKGRHSGEGKRKGTREARLPSKVVWMRKLRVLRRLLRKYRELEKIDRHVYHEMYMKAKGNTFKNKRALMETIHKLKAERAREKVISHQFETKRKAAMHHRRWSVNNNECKLCV* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0190 183 PANTHER 60S RIBOSOMAL PROTEIN L19 1 171 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vvi17g0190 183 FunFam Ribosomal protein L19 57 181 - -
Vvi17g0190 183 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vvi17g0190 183 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vvi17g0190 183 FunFam Ribosomal protein L19 1 56 - -
Vvi17g0190 183 Gene3D - 57 181 - -
Vvi17g0190 183 MobiDBLite consensus disorder prediction 52 86 - -
Vvi17g0190 183 MobiDBLite consensus disorder prediction 61 86 - -
Vvi17g0190 183 CDD Ribosomal_L19e_E 4 163 IPR033935 GO:0003735|GO:0022625
Vvi17g0190 183 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vvi17g0190 183 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vvi17g0190 183 SUPERFAMILY Ribosomal protein L19 (L19e) 4 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vvi17g0190 183 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0190 Vvi-Chr17 1774080 1775152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0190 1 163 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 71.166 8.44e-86 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0190 K02885 - vvi:100267867 341.658