Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0184 ATGGCTTTGCGTTTGATCCTCCTCCTGCAACTTGCAGTACTGGTATGGGAGTTAGAAGTTGCCGCTGAACTAGCTCTGCCGGGCTGTGCCAGCCACTGCGGCAATATCAGCATCCCATATCCATTTGGGACTACCCCAGAATGCTACCTAAACCAAGATTTCTTCATCAATTGCAACTCCACCCATCAAGCTTTTCTGACGGACAGTAACATAGATGTTCTATCGATTTCGGTTTCGGGTCAATTGCGAGTTCTTTCGTATGTGGCTCGAGACTGTTACAACAAATCCGGGCAAAGAGTCGCCAACAACGATCCATGGATGACACTGGCGAAGTTCCCCATCTCCCATACTCGGAACAAGTTCATGACAGTGGGCTGCGACACCTACGCTTTCATTAAAGGCTCAAGTGGGAAAAAATACAAGACTGGCTGCTTATCACTGTGTGAGAGCAAAGATAGTGTTATCAACGGGTCTTGCTCGGGGATCGGCTGTTGCCAGACCACAATCCCTGTAAATGTAACGAGCATTGATATCAGTGTGGACAGCTACGACAGCTACACAGGTGTGTGGGAATTTAATCCATGCGGCTTCGCTTTTGTGGCTGAAGATGGCTATTTCAACTTCTCTTCCGCAGACCTCCTTGATTTACAGAACAAAACCAAGGTTCCTACAGTGCTTGATTGGACAATAGGAGATGAGAAATGCGACCAAGCAAAGGAGAATGGAACAAGTTACGCCTGCAAGGACAATAGCTACTGTTATGATCCAGACAATGGTCCTGGGTATAGGTGCAATTGCTCAGAGGGATATGAAGGAAACCCCTATCTCTTAAATGGTTGCAAGGATATCGATGAGTGTGAGGTTGATAACCCCTGCAATGTAACACATACATGCCGGAATTTACCAGGGAGTTTTAGTTGTTTTTGCCCGGCTGGGTACGAAGGTGATGGATTTAAAATTGGCACAGGCTGCAGTCCCATGCCTAGCTCAGAGTCGAAGTTTCCTTTGGTTAATGTTGCCTTAGGTATCAGCATAAGTCTTTTAGTTTTACTTTTGGTGAGTTCTTGGTTGTATTGGGGATTTAGGAAACGAAAGCTTATCAAATTGAAAGAGAAATTCTTTGAGCAAAATGGTGGTATCATGCTGCAACAACTACTCTCTAAGCACGAAGGATTTGCTGAAGCAACTAAAATATTTACTACAGAAGACCTCAAGAAAGCAACAAACAACTATGATGAAAGAAGAGTTTTAGGTCGTGGAGGTCAAGGAACAGTTTATAAAGGAATATTGGCAGATAATAGAGTTGTTGCAGTTAAAAAGTCCAAAATAATGGACCAAAGCCAAGTTGAGCAGTTCATTAATGAAGTGATTATCCTCTCCCAAGTCAATCATAGAAATGTGGTAAAGCTATTAGGATGTTGTTTAGAGACGGAAGTTCCTTTATTAGTCTATGAATTTGTGATTAATGGAACCCTTTATGATCATCTACACAACCAAGATCAAACATACTCTATTTCATGGGAAACTCGCTTACGAATAGCAACTGAAACGGCTGGAGCCCTTTGGTATTTACACTCTGCTGCTTCAACTCCGATTATCCATAGAGATGTGAAGTCTACTAACATCCTTTTAGACAACAATTATACTGCCAAGGTATCCGATTTTGGAGCTTCAAGATTAATACCTCTAGATCAAGCTCAATTGACGACACTGGTACAAGGGACTCTTGGATACTTAGATCCTGAGTACTTTCACTCGAGTCAATTAACCGAAAAGAGTGATGTTTATAGTTTTGGGGTTGTTCTTGTGGAATTACTAACAGGTAAAAAGGCACTTTCCTTTGATAGACTTGAAGAAGAGAGAAATTTAGCAATGTTCTTTGTTTCTTCAATGAAAGACGATCGCTTGTTTGAAATTCTTGATGATAGAGTTTTGAATGAGGGAAACACTAAGCATTTGAAGGAAGTTGCTATCTTAGCAAAGAGGTGTTTGATGGTAAAAGGAGAGGAAAGGCCTACTATGAAGGAAGTTGCGATGGAACTAGAGGGATTAAGAATATTAGAAACACATCCTTGGGTGAACAATAATTCAAATCCAGAAGAAACTGAATACTTGATTGGTCAATCACAAGATGCTTATAAAGGTGATAACAGTAGCAACATAATAGGATATGATAGCATAAGAGATCAAGTCATGGTGGACTTTAATGGTGGGCGGTGA 2220 0.4144 MALRLILLLQLAVLVWELEVAAELALPGCASHCGNISIPYPFGTTPECYLNQDFFINCNSTHQAFLTDSNIDVLSISVSGQLRVLSYVARDCYNKSGQRVANNDPWMTLAKFPISHTRNKFMTVGCDTYAFIKGSSGKKYKTGCLSLCESKDSVINGSCSGIGCCQTTIPVNVTSIDISVDSYDSYTGVWEFNPCGFAFVAEDGYFNFSSADLLDLQNKTKVPTVLDWTIGDEKCDQAKENGTSYACKDNSYCYDPDNGPGYRCNCSEGYEGNPYLLNGCKDIDECEVDNPCNVTHTCRNLPGSFSCFCPAGYEGDGFKIGTGCSPMPSSESKFPLVNVALGISISLLVLLLVSSWLYWGFRKRKLIKLKEKFFEQNGGIMLQQLLSKHEGFAEATKIFTTEDLKKATNNYDERRVLGRGGQGTVYKGILADNRVVAVKKSKIMDQSQVEQFINEVIILSQVNHRNVVKLLGCCLETEVPLLVYEFVINGTLYDHLHNQDQTYSISWETRLRIATETAGALWYLHSAASTPIIHRDVKSTNILLDNNYTAKVSDFGASRLIPLDQAQLTTLVQGTLGYLDPEYFHSSQLTEKSDVYSFGVVLVELLTGKKALSFDRLEEERNLAMFFVSSMKDDRLFEILDDRVLNEGNTKHLKEVAILAKRCLMVKGEERPTMKEVAMELEGLRILETHPWVNNNSNPEETEYLIGQSQDAYKGDNSSNIIGYDSIRDQVMVDFNGGR* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0184 739 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 298 309 IPR000152 -
Vvi17g0184 739 FunFam Wall-associated receptor kinase 2 381 486 - -
Vvi17g0184 739 SMART egf_5 285 325 IPR000742 -
Vvi17g0184 739 SMART egf_5 234 281 IPR000742 -
Vvi17g0184 739 FunFam Fibrillin 2 281 321 - -
Vvi17g0184 739 Pfam Wall-associated receptor kinase galacturonan-binding 29 82 IPR025287 GO:0030247
Vvi17g0184 739 Pfam Protein tyrosine and serine/threonine kinase 415 681 IPR001245 GO:0004672|GO:0006468
Vvi17g0184 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Vvi17g0184 739 CDD EGF_CA 282 316 - -
Vvi17g0184 739 SMART serkin_6 411 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0184 739 Pfam Calcium-binding EGF domain 282 314 IPR001881 GO:0005509
Vvi17g0184 739 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Vvi17g0184 739 FunFam Wall-associated receptor kinase 2 487 704 - -
Vvi17g0184 739 ProSiteProfiles Protein kinase domain profile. 411 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0184 739 Gene3D Phosphorylase Kinase; domain 1 377 486 - -
Vvi17g0184 739 Gene3D Transferase(Phosphotransferase) domain 1 488 702 - -
Vvi17g0184 739 CDD STKc_IRAK 417 684 - -
Vvi17g0184 739 ProSitePatterns Calcium-binding EGF-like domain signature. 282 307 IPR018097 GO:0005509
Vvi17g0184 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 694 IPR045274 GO:0007166
Vvi17g0184 739 SUPERFAMILY EGF/Laminin 282 319 - -
Vvi17g0184 739 Pfam Wall-associated kinase 157 267 IPR013695 GO:0004674|GO:0016020
Vvi17g0184 739 FunFam Wall-associated receptor kinase 2 233 280 - -
Vvi17g0184 739 Gene3D Laminin 232 320 - -
Vvi17g0184 739 SMART egfca_6 282 325 IPR001881 GO:0005509
Vvi17g0184 739 SUPERFAMILY Protein kinase-like (PK-like) 395 682 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0184 Vvi-Chr17 1703011 1706116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0184 1 739 Receptor kinase-like Gene Family AT1G21230 49.067 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0184 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0184 - - vvi:100252663 1472.99