Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0179 ATGCTAGCATTTCTACCCATTTCTAAGTCTCCGTTAATTTCAAATTCTGCGCTTCCCTTCAATACATTCCGCTTGAGACCTCCCAAATGGCGTCGCTGGGGTGTAATTAGAGCTGCTCGATCTGATTACTATTCCACCCTGAATGTCAGCAGGAACTCGACTTTGAAGGAGATTAAGAGCTCTTACAGGAAACTTGCTCGTAAGTACCATCCAGATTTGAACAAGAGCCCTGGAGCTGAGGAAAAGTTTAAAGAGATAAGTGCTGCATATGAGGTCCTATCTGATGATGAAAAAAGGTCTTTATATGATCGCTTTGGTGAGGCAGGTTTAGAGGGAGAATATGATAGGTCAAATGGTGGTTCAAAGGGGGTGGACCCTTTTGATTTCTTTGATGCATTTTTTGATGAGTCAAATGGGCCTTTTGGAAGATGGGGTGAACCAGGAGGCATGAACTTCAATTCGAGAAGCAAGGGCAACCAGGGGCTTGATGTTCGGTATGACCTATTTTTGAGCTTTGAAGAATCAATTTTCGGTAAACAGGAGGAGATTGAAGTTTCCTGTTTTGAGGTATGCGACAATTGTGGTGGAACAGGTGCCAAATCTAGCAGTTGCATAAAAACATGTACCAACTGTGGAGGTAAAGGAGGGGTGATGAAGACTCAGAAGACGCCATTTGGAATAATGTCTCAGGTATCTACTTGCTCAAAATGTGGTGGAGATGGTAAAATAATCACAAGTCACTGCCAAAGTTGTGGTGGCCATGGTAAAGTACAGTCAAAGCAAAGTATTGAAGTGATCATCCCACCTGGTGTTAGTGATGGAGCCACAATGCAAGTTCGAGGAAAGGGAAACTTTGATAAGAAAAGGGGCATGGCCGGTGATCTATATTTAGTACTCCATGTAAATGAAAAACATGGAATTTGGAGGGATGGTCTCAATCTTTACTCAAAGGTTAATGTTGATTATACTGAGGCAATATTAGGGACTGTTAAAAAGGTGGAAACCGTGGAGGGTTTGAGAGATCTTCAAATTCCTTCTGGAACTCAGCCTGGAGATTCAGTAAAATTGTCATACATGGGGGTCCCGGACATCAATAGGCCCTCCAGACGAGGTGACCATAACTTTGTTGTGAATGTTCTGATCCCAAAAGATATCAGTGACACAGAACGCATACTTGTTGAGAAGTTGGCTTCAATGAGGACAACCTGCAATGACCAGCCAGTTTCTTCCGAGGGTCCAGCTAAGGACCAAAAACATCATGCTTCACCTAAAAGGAGTGAACATGCTCCATCTATGTGGAAATCAATCAAGAACTTCTTGTGGAGGAACCCGTCCAGAACAAGTTTTGCTTCAGTTAGTGTGGATACTTCAACATTATTGCAGAGATGTAGCAGGCCAGATTCCTCACTCATGATCTCTTTATTGACGGTTTTCATCATAACATGTATATTTACCCTGATGGGTAAGAGTAATACTGCAAATTATTGCCTGAAAAGAGAAAAGGAAAGAGACTATTCTCCTCGTTACCATAGAACAATAAAAGAAAAGCACTAG 1554 0.4215 MLAFLPISKSPLISNSALPFNTFRLRPPKWRRWGVIRAARSDYYSTLNVSRNSTLKEIKSSYRKLARKYHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEYDRSNGGSKGVDPFDFFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEESIFGKQEEIEVSCFEVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTCSKCGGDGKIITSHCQSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGDLYLVLHVNEKHGIWRDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSVKLSYMGVPDINRPSRRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSEGPAKDQKHHASPKRSEHAPSMWKSIKNFLWRNPSRTSFASVSVDTSTLLQRCSRPDSSLMISLLTVFIITCIFTLMGKSNTANYCLKREKERDYSPRYHRTIKEKH* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0179 517 Pfam DnaJ central domain 191 255 IPR001305 GO:0031072|GO:0051082
Vvi17g0179 517 CDD DnaJ_C 163 385 - -
Vvi17g0179 517 Pfam DnaJ C terminal domain 164 382 IPR002939 -
Vvi17g0179 517 Hamap Chaperone protein DnaJ [dnaJ]. 39 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi17g0179 517 Gene3D - 161 297 - -
Vvi17g0179 517 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Vvi17g0179 517 FunFam Chaperone protein dnaJ A6 chloroplastic 39 146 - -
Vvi17g0179 517 SUPERFAMILY Chaperone J-domain 38 147 IPR036869 -
Vvi17g0179 517 PRINTS DnaJ domain signature 62 77 IPR001623 -
Vvi17g0179 517 PRINTS DnaJ domain signature 44 62 IPR001623 -
Vvi17g0179 517 PRINTS DnaJ domain signature 98 117 IPR001623 -
Vvi17g0179 517 PRINTS DnaJ domain signature 78 98 IPR001623 -
Vvi17g0179 517 MobiDBLite consensus disorder prediction 412 430 - -
Vvi17g0179 517 FunFam Molecular chaperone DnaJ 183 260 - -
Vvi17g0179 517 Gene3D - 191 255 - -
Vvi17g0179 517 Gene3D DnaJ domain 38 143 IPR036869 -
Vvi17g0179 517 SMART dnaj_3 41 98 IPR001623 -
Vvi17g0179 517 ProSiteProfiles Zinc finger CR-type profile. 178 260 IPR001305 GO:0031072|GO:0051082
Vvi17g0179 517 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 301 IPR008971 GO:0006457|GO:0051082
Vvi17g0179 517 CDD DnaJ_zf 191 255 IPR001305 GO:0031072|GO:0051082
Vvi17g0179 517 NCBIfam molecular chaperone DnaJ 42 398 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi17g0179 517 ProSiteProfiles dnaJ domain profile. 42 106 IPR001623 -
Vvi17g0179 517 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 22 401 - -
Vvi17g0179 517 Gene3D - 308 399 - -
Vvi17g0179 517 Pfam DnaJ domain 42 103 IPR001623 -
Vvi17g0179 517 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 178 258 IPR036410 -
Vvi17g0179 517 CDD DnaJ 42 95 IPR001623 -
Vvi17g0179 517 SUPERFAMILY HSP40/DnaJ peptide-binding domain 309 390 IPR008971 GO:0006457|GO:0051082
Vvi17g0179 517 MobiDBLite consensus disorder prediction 403 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0179 Vvi-Chr17 1644955 1656845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0179 37 103 C2H2 Transcription Factor Family AT1G74250 43.836 1.92e-08 55.1