Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0177 ATGGAATCCCCATTGCCTGAATTTCATGATAATGTTAATGTTCAGCCACCATTAAAACGGCGGCGGTGGTGGTTTTGTGGGATGGAGCACCGCCGACTAGTGTTGCTAGTTGTTTTCTTGGTTATTGTCGAAATGTTGCCTGCCGGAAAATCAGATCTGGCGGCCGACAGGACGGCGCTTCTTGGGTTGCGGAAGGTGGTGAGTGGCCGGACTTTGCTGTGGAATGTGAGTCAGGATAGCCCCTGCCTATGGGCAGGAGTTAAGTGCGAGAAAAACAGGGTGGTGGGCCTCCGTCTCCCAGGCTGCTCCCTGACGGGGAAAATTCCAGCTGGGATTATCGGGAACCTGACTGAACTCCGCGTTCTCAGTCTCCGGATGAACGCCTTGGAGGGACCTCTGCCGTCGGATCTTGGCTCCTGTGCCGATCTTCGGAATCTTTACTTGTTTGGGAATGCATTTTCCGGCGAGATCCCGGCGTCTTTGTTCGGTCTTACCAAAATTGTTCGCCTGAACCTGGCCGCGAACAACTTATCCGGCGAGATCTCGACGGACTTTAACAAGCTCACTCGGTTGAAGACGCTGTATCTGCAGGAGAATATCCTCAGTGGCTCAATCCCCGATTTGACCCTAAAGCTTGATCAGTTCAATGTGTCCTTCAATCTATTAAAGGGTGAGGTTCCGGCGGCTCTGCGTTCAATGCCGGCATCGGCATTTTTAGGAAACTCTATGTGCGGTACGCCGCTAAAATCTTGCTCCGGCGGCAATGACATTATCGTCCCTAAGAATGACAAGAAGCATAAGTTATCCGGTGGTGCCATTGCCGGAATTGTGATCGGATCGGTGGTGGGTTTTGTTTTAATTTTGATAATTTTGTTTGTTTTGTGCGGAAAGAAGAGGGGAAAGAAGACGAGTGCGGTGGATGTGGCGGCAGTGAAGCATTCGGAAGTTGAGATTCAGGGCGAGAAACCAATCGGAGAGGTAGAAAACGGAAATGGGTATTCGGTAGCTGCGGCTGCCGCGGCGGCAATGACCGGAAATGGAAATGCAAAGGGAGATATGAGCAATGGCGGGGCTAAAAGACTGGTGTTTTTCGGGAATGCAGCGAGGGTGTTTGATTTGGAGGATTTGTTGAGAGCATCGGCAGAGGTGTTGGGGAAGGGGACATTTGGGACGGCATACAAAGCCATTTTGGAGATGGGGACAGTGGTGGCTGTGAAGAGGCTCAAGGACGTGACAATTTCAGAGAATGAATTCAGGGAGAAGATTGAAGGGGTTGGAGCCATGGATCATGAACATTTGGTCCCCCTTCGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTGTACGATTACATGCCCATGGGAAGCTTGTCTGCACTACTCCATGGAAACAAAGGAGCAGGTAGGACTCCATTGAATTGGGAAATCAGATCAGGGATTGCTCTTGGAGCTGCTCGTGGTATTGAATACCTACACTCTCAAGGTCCTAGTGTCTCTCATGGAAACATTAAATCATCAAATATCCTCCTCACCAAGTCTTATGATGCCCGGGTCTCTGATTTTGGCCTGGCTCATCTTGTTGGGCCCTCCTCCACACCTAACAGGGTTGCTGGCTACCGTGCCCCAGAGGTCACCGACCCTCGCAAGGTCTCTCAAAAGGCTGATGTTTATAGCTTTGGTGTGTTGATCTTGGAGCTTCTGACAGGTAAGGCCCCCACCCATGCCATCTTGAATGAGGAAGGGGTTGACCTCCCAAGATGGGTGCAGTCCATAGTCCGTGAGGAGTGGACTTCAGAGGTCTTTGATCTCGAGCTCCTCAGGTACCAGAATGTTGAGGAGGAGATGGTTCAGCTCTTACAACTTGCCATAGACTGCACTGCTCAGTACCCTGACAAGCGCCCGCCAATATCTGAAGTAACAAAGCGGATTGAGGAGCTTTGTCGCTCTAGTCTGCGAGAATATCAAGACCCACAACCCGACCCAGTCAATGATGTGGATGATTTGTCTTCTCGGTGA 2019 0.5072 MESPLPEFHDNVNVQPPLKRRRWWFCGMEHRRLVLLVVFLVIVEMLPAGKSDLAADRTALLGLRKVVSGRTLLWNVSQDSPCLWAGVKCEKNRVVGLRLPGCSLTGKIPAGIIGNLTELRVLSLRMNALEGPLPSDLGSCADLRNLYLFGNAFSGEIPASLFGLTKIVRLNLAANNLSGEISTDFNKLTRLKTLYLQENILSGSIPDLTLKLDQFNVSFNLLKGEVPAALRSMPASAFLGNSMCGTPLKSCSGGNDIIVPKNDKKHKLSGGAIAGIVIGSVVGFVLILIILFVLCGKKRGKKTSAVDVAAVKHSEVEIQGEKPIGEVENGNGYSVAAAAAAAMTGNGNAKGDMSNGGAKRLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAILEMGTVVAVKRLKDVTISENEFREKIEGVGAMDHEHLVPLRAYYYSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLILELLTGKAPTHAILNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLAIDCTAQYPDKRPPISEVTKRIEELCRSSLREYQDPQPDPVNDVDDLSSR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0177 672 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Vvi17g0177 672 FunFam Probable inactive receptor kinase At1g48480 453 655 - -
Vvi17g0177 672 SUPERFAMILY L domain-like 64 233 - -
Vvi17g0177 672 ProSiteProfiles Protein kinase domain profile. 378 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0177 672 Pfam Leucine rich repeat N-terminal domain 54 89 IPR013210 -
Vvi17g0177 672 FunFam Probable inactive receptor kinase RLK902 53 209 - -
Vvi17g0177 672 Gene3D Phosphorylase Kinase; domain 1 348 452 - -
Vvi17g0177 672 MobiDBLite consensus disorder prediction 651 672 - -
Vvi17g0177 672 SUPERFAMILY Protein kinase-like (PK-like) 382 661 IPR011009 -
Vvi17g0177 672 FunFam pollen receptor-like kinase 1 347 452 - -
Vvi17g0177 672 Pfam Protein kinase domain 381 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0177 672 Gene3D Ribonuclease Inhibitor 54 211 IPR032675 -
Vvi17g0177 672 Gene3D Transferase(Phosphotransferase) domain 1 453 664 - -
Vvi17g0177 672 PANTHER OS05G0588300 PROTEIN 34 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0177 Vvi-Chr17 1631169 1633796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0177 52 667 Receptor kinase-like Gene Family AT1G48480 64.567 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi17g0177 Pkinase 2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0177 - - vvi:100243943 1263.83