Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0176 ATGGTGTTCAAGGGTAGATTCTTCTCTTCCAAGAAGTCCGATTCTTCAAGTCCTGACGGATCGAATAGTCCTCGATCGTTCGGCTCCAACTCTCCAAGCAGATCCGAGAAGAAGAAGGTCAAATCGCCCAAAGACGGCAACCAGATCGGTACCTCCGGGTTCGCCACGCCGTGCGGTAAAACTCAGGTGAAGGAGAGTGGGAAGCAGCAGAAGAAGGATGTGAAGGGGAAGGAGACTCAGGCTCCGGCACCGGCGAAGCCCAACACTTCGAGTTCCAAGTTGCGGGCGGCACCGGATGTGAAGGAGGCGGCGCCTTCGTCCTCGGCGGCGGCGGTGTCGCCGATTCTGGCGTCGTCGCTGGGGTTGCATCGGATTAAGACTACGAGATCGGGGCCATTGCCGCAGGAGAGTTTTTTCGGGTTTCGGGGAGATAAGGGTTCGGCTCTTGGTGCTAGTAATCTTTCGAGGCCCAGTGGTGGCGTTGGTGGTGATGGCTGCTTGAGTTCAGGTTCGGGGTCGAAGAGCAGTGTGAAAAAGAAGGAAGGGGTTAATCAGAGTAGGATAGGTTCTCAGGAGCAGGTTTTGTTAGGGAATTGGGCTGATACTGGAAATAATTCGGATGGCATGTCGAGTGAGAGTGCTCCATCTAGAGACCAGAGTCCTCATGTGCAAGTGCGGTCGCGGCTGCCAAACGGTGAATCCTCCTCTGAAGTGGGGCGATACAATAAACAATGGGGCCATTCAGGAGGCTTGAGAAGTTCAGATGTTTGTACTCCAGAGACTTCATATGATTGTGAAACCCCGAAGGAGTCTGAATCTCCTCGTTTTCAAGCTATACTCCGGGTGACAAGTGGAACTAGAAAGAGGCTTCCTGCTGACATCAAAAGTTTCTCTCATGAATTAAATTCTAAAGGTGTACGACCTTTCCCATTTTGGAAGCCGCGAGGCTTAAATAACTTAGAGGAGGTTTTGGCTGTCATACGAGTAAAGTTTGACAAAGCAAAGGAAGAAGTGAACTCTGATCTGGCAATTTTTGCAGCAGATTTGGTGGGAATTCTTGAAAAAAATGCAGAAAGTCATCCTGAATGGCAAGAAACTATTGAAGACTTGCTGGTTTTGGCTCGGCGCTGTGCTGTGACATCTTCGGGACAGTTTTGGCTTCAGTGTGAAGGTATAGTTCAAGAACTTGATGATAGGCGTCAGGAACTCCCCATGGGTATGCTGAAGCAGCTTCACACCCGAATGCTTTTCATTCTCACGAGGTGTACCAGATTGTTGCAGTTCCACAAGGAAAGTGGTTTGGCTGAGGATGAACATGTTCTTCAGCTTCGTCAATCTAGAATCCTACATTCTGCCGATAAACGAGTTCCATCAGGTGTGGGAAGGGATGGGAAAAGTTCTAGTGCTGCAAAAGCCTCGAGGGCAGCTACGAGGAAATCTTATAGCCAGGAGCAGCATGGCTTGGACTGGAAGAGCGATCATGCTATACAACCTGGAAACTTTCTCTCTCCTACTTCTGAAACAACAAAGACTTTGGACTCTCCTGTGGGTAGGGATCGTATGGCTTCTTGGAAGAAACTACCATCTCCAGCAGGGAAAACTGTAAAAGAATCTGTTCCAATGAAGGAACAGACTGATATTAAGGTGGAGTCTTCAAAGATGTTAAACAACCAGGCTATTCCTGATGTTGATTTGACAACTGCTAAGCCTCCTGACATTCCTCCGGCTAAAGATTTTCATGGACATTCTTCTATTTCGTCCAAGCACCAGCACAAAGCTTCTTGGGGTTATTGGGGAGATCAGCCGAATATTTCTGAGGATAGTTCAATAATTTGTCGCATTTGTGAGGAGGAGGTTCCAACTTCCCATGTGGAAGACCATTCAAGAATTTGTGCAATTGCTGACCGATGCGATCAGAAGGGTATAAGTGTCAATGAACGGCTCATTAGAATTGCTGAAACTCTTGAGAAGATGATGGAATCCCTTTCACAGAAGGATTTTCAACATGTGGGAAGCCCAGATGTTGTTGCAAAAGTATCAAACTCGAGCGTTACTGAAGAATCTGATGTGCTCTCACCAAAACTTAGTGATTGCTCTCGCAGAGGCTCAGAAGACATGCTTGATTGTTTCCCTGAAGCTGATAACTATGTTTTTGTGGATGACTTAAAGGGCTTTCCATCCATGTCATGTAAGACTCGTTTTGGACCAAAGTCTGATCAAGGAATGACAACTTCATCTGCTGGTAGCATGACTCCTAGGTCTCCATTATTGACACCGAGGACCAGCCAGATAGACCTGCTATTGGCTGGAAAGGGTGCCTACTCTGAACATGATGATCTTCCACAGATGAATGAGCTTGCTGATATTTCAAGATGTGCGGCAAATGCATCTTTGCATGATGATCACTCTATGTCAATTTTGCTTGGATGCCTTGAAGACCTGAGGGTTGTTATTGACCGTAGGAAGTTGGATGCACTTACAGTGGAGACATTTGGGACACGCATTGAAAAGCTGATTCGGGAGAAGTATTTGCAGCTTTGTGAGCTTGTGGATGATGAGAAGGTTGATATCACAAGTACTGTAATTGATGAAGATGCACCTTTAGAAGATGATGTGGTTCGTAGCTTGAGAACTAGCCCAATACATTCTACTTCTAAAGACCGCACTTCAATAGATGATTTTGAGATAATAAAACCAATAAGTCGTGGGGCATTTGGCCGGGTTTTCTTGGCAAAAAAGAGAACAACAGGGGATCTTTTTGCAATTAAGGTTCTTAAAAAGGCAGATATGATCCGTAAGAATGCTGTTGAGAGTATTTTGGCAGAACGTGATATTTTAATCTCAGTTCGCAATCCTTTTGTGGTTCGCTTTTTTTATTCATTTACATGTCGTGAGAACTTGTATCTTGTGATGGAATACTTGAATGGAGGAGATCTGTATTCATTATTGAGGAGTTTAGGCTGCTTAGATGAAGATGTTGCTCGTGTATATATAGCAGAAGTGGTGCTTGCTTTGGAATATTTACATTCTCTGCGTGTGGTTCATCGTGATCTGAAGCCTGATAATTTGTTGATTGCACATGATGGTCATATAAAGTTGACAGACTTTGGATTATCAAAGGTTGGTCTCATCAACAGCACTGATGATTTGTCTGGTCCAGCAGTTAGTGGGACGTCCCTACTTGAACAAGATGAACCTCAGTTGTCTACGTCTGAGCAACATCGAGAAAGGCGGAAGAAACGCTCTGCTGTGGGAACGCCTGATTATTTGGCACCAGAGATACTTTTGGGAACAGGACATGGCACAACTGCTGATTGGTGGTCTGTTGGAGTTATCCTGTTTGAACTGATTGTTGGTATTCCACCATTCAATGCAGAGCATCCTCAGATGATATTTGACAATATTCTCAACCGTAACATACCATGGCCCCGGGTACCAGAAGAAATGAGCCCTGAAGCACAAGATCTAATCCATCGATTATTGACAGAAGATCCTTATCAGAGACTTGGAGCTGGAGGAGCATCAGAGGTGAAGCAGCATGCATTTTTCAGAGATATCAATTGGGACACACTTGCTAGACAGAAGGCTGCATTTGTTCCCTCCTCAGAGAGTGCACTTGATACTAGTTACTTCACAAGTCGGTACTCATGGAACCCCTCAGATAACCAGGTTCTGGCCAGTGAAGAGGATTCCAGTGATGACGGCAGTATGAGTGGTAGCAGTAGCTGCCTGAGTAATCGCCAAGATGAACTGGGAGATGAATGTGGAGGTCTTGCTGAGTTTGACTCGGGCTCATCTGTTAATTACTCCTTCAGTAATTTCTCATTCAAGAATCTCTCACAGCTTGCTTCAATCAACTATGATTTGCTTACTAAAGGTTGGAAGGAGGATCCCCCAACAAATCATAACGCATAA 3915 0.4544 MVFKGRFFSSKKSDSSSPDGSNSPRSFGSNSPSRSEKKKVKSPKDGNQIGTSGFATPCGKTQVKESGKQQKKDVKGKETQAPAPAKPNTSSSKLRAAPDVKEAAPSSSAAAVSPILASSLGLHRIKTTRSGPLPQESFFGFRGDKGSALGASNLSRPSGGVGGDGCLSSGSGSKSSVKKKEGVNQSRIGSQEQVLLGNWADTGNNSDGMSSESAPSRDQSPHVQVRSRLPNGESSSEVGRYNKQWGHSGGLRSSDVCTPETSYDCETPKESESPRFQAILRVTSGTRKRLPADIKSFSHELNSKGVRPFPFWKPRGLNNLEEVLAVIRVKFDKAKEEVNSDLAIFAADLVGILEKNAESHPEWQETIEDLLVLARRCAVTSSGQFWLQCEGIVQELDDRRQELPMGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEHVLQLRQSRILHSADKRVPSGVGRDGKSSSAAKASRAATRKSYSQEQHGLDWKSDHAIQPGNFLSPTSETTKTLDSPVGRDRMASWKKLPSPAGKTVKESVPMKEQTDIKVESSKMLNNQAIPDVDLTTAKPPDIPPAKDFHGHSSISSKHQHKASWGYWGDQPNISEDSSIICRICEEEVPTSHVEDHSRICAIADRCDQKGISVNERLIRIAETLEKMMESLSQKDFQHVGSPDVVAKVSNSSVTEESDVLSPKLSDCSRRGSEDMLDCFPEADNYVFVDDLKGFPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQIDLLLAGKGAYSEHDDLPQMNELADISRCAANASLHDDHSMSILLGCLEDLRVVIDRRKLDALTVETFGTRIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPLEDDVVRSLRTSPIHSTSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRSLGCLDEDVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTSLLEQDEPQLSTSEQHRERRKKRSAVGTPDYLAPEILLGTGHGTTADWWSVGVILFELIVGIPPFNAEHPQMIFDNILNRNIPWPRVPEEMSPEAQDLIHRLLTEDPYQRLGAGGASEVKQHAFFRDINWDTLARQKAAFVPSSESALDTSYFTSRYSWNPSDNQVLASEEDSSDDGSMSGSSSCLSNRQDELGDECGGLAEFDSGSSVNYSFSNFSFKNLSQLASINYDLLTKGWKEDPPTNHNA* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0176 1304 Pfam Protein kinase domain 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 65 79 - -
Vvi17g0176 1304 PANTHER SERINE/THREONINE-PROTEIN KINASE 595 1275 - -
Vvi17g0176 1304 SMART serkin_6 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0176 1304 Coils Coil 317 337 - -
Vvi17g0176 1304 Coils Coil 645 665 - -
Vvi17g0176 1304 SUPERFAMILY Protein kinase-like (PK-like) 891 1226 IPR011009 -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 1224 1248 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 498 512 - -
Vvi17g0176 1304 Gene3D Phosphorylase Kinase; domain 1 892 1212 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 735 756 - -
Vvi17g0176 1304 CDD STKc_MAST_like 900 1188 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 1054 1083 - -
Vvi17g0176 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1013 1025 IPR008271 GO:0004672|GO:0006468
Vvi17g0176 1304 Gene3D Transferase(Phosphotransferase) domain 1 978 1201 - -
Vvi17g0176 1304 FunFam probable serine/threonine protein kinase IREH1 892 981 - -
Vvi17g0176 1304 ProSiteProfiles Protein kinase domain profile. 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0176 1304 ProSiteProfiles AGC-kinase C-terminal domain profile. 1184 1286 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 1 112 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 9 31 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 168 261 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 1068 1083 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 45 64 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 127 270 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 1224 1249 - -
Vvi17g0176 1304 MobiDBLite consensus disorder prediction 452 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0176 Vvi-Chr17 1582434 1627116 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0176 1 1298 AGC Kinase Gene Family AT3G17850 68.213 0.0 1657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vvi17g0176 Pkinase 4.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0176 - - vvi:100259538 2471.43