Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0174 | ATGGAGTTCGGATTCTTCAGAGGCTTGCCGGAGAATCTTTTCCTTCTCGACATTGCCGGCCAGTTGGCGTTTCTCGTCGACATGGTCGTCCGCTTCTTCGTCGCCTTTCGTGACACTCAGTCATACACTACTGTCGACAGCCACAAGCGCATTGCCCTCAGGTACTTGAAATCTCGGTTTGTGGTCGATTTTCTCGGATGTCTGCCACTGGATGCTATTTACCAGGTATCCTTTTGTGGCAGGAAAGAACCAGTGAGGTACCTATTGTGGATTAGGCTAAGTCGGGCACTAAGAGTTACAGAGTTTTTTGAGAAGTTGGAGAAAGATATCCGAATCAATTACTTGTTTACAAGGATTGTGAAACTTCTTGTTGTTGAACTATATTGCACACACGCTGCTGCCTGCATCTTTTACTATCTTGCCACCACCATGCCTGCCTCCCAGGAAGGTTATACGTGGATAGGAAGCCTAAAGATGGGTGACTATAGTTATTCTCATTTCAGAGATATTGATCTTTGGAAGCGCTATTTTACATCACTATATTTTGCCATTGTTACAATGGCAACTGTTGGTTATGGAGACATACATGCAGTCAATGTCAGGGAAATGCTATTTGTCATGGCTTATGTTTCCTTTGACATGATTCTTGGCGCTTATCTGCTTGGTAACATGACAGCATTGATCGTCAAAGGATCAAAGACAGAAAAGTTTAGGGATAGAATGGCAGAACTTATTAGCTACATGAACAGAAACAAACTTGGGAGGCAGATAAGTAATGAAATCAAACACCATATGCGATCGCAGTACGAGACCAGCTACACAGAAGCTGCTTTACTTCAGGATATTCCAGTGTCTATTCGTGCTAAGATCTCACAAAAGTTATATGGGCCCTACATTAGCAAGGTTTCTCTTTTCAAGGGATGCTCCCCGGGATTCCTTAAGCAGATTGCAACCAGAGTCCACGAGGAAATTTTCCTCCCAGGAGAAGTGATACTTGAAGAGGGAAATATGGTGGATCAACTTTATATTGTCTGTAATGGTAAACTGAAGGGAGTAGGAAGCAACGAAGACGAAACTGAAGGACCTCTGATTCATCTACAAACTAATGACTCATTTGGTGAAATTCCTCTTTTATGTAACACTCCTCAGGCTTATACAGTTCAAGTTGTTGAACTATGCAGGCTCGTGCGACTTGATAAACAATCTTTCATAAACATTCTTGAGATATACTTTTCTGATGGGCGGATCATATTAAACAACCTTCTTGAGGGAAAAGGATCAAATCTTCGAAACAAGATATTGGAATCTGATATCACACTTTATATTGGAAAGCGTGAGGCAGAGGTGGCTATGAGGGTAAATTGTGCTGCTTATAATGGAGATTTGTACCAACTAAGGCGTTTGATTGAGGCAAGAGCAGATCCTAATAAGACAGACTATAATGGAAGATCGCCTTTGCATTTTGCGGCATCCAAGGGATATGAAGATATTACTGATTACCTTATTGAACTGAGAGTGAACATCCATCTTTCAGATAATTTTGGAAACACTCCCTTGCTTGAAGCCATAAAGAATGGGCATGATGGAGTCACTTCTTTACTAGTTAAATCAGGGGCATTATTGACAGTGGAAGACGCTGGTAACTGTCTCTGCATGACTGTTGTAAGGAGGGATTTAAATTTTTTGAAAAGGCTTTTGGCCAATGGCATTAATCCAAATGCCAAAAATTATGATTCACGAACACCACTTCATCTTGCTGCCTCAGAAGGGTTATATTCAATGACAAATTTACTGTTGGAAGCAGGGGCAAGTGTTCTCGCAAAGGATAGATGGGGAAATACTCCACTTGATGAGGCTCGCATTGGTGGAAATAAAAATTTAATCAAGCTTCTGGAAGAAGCGATGTCTGCTCAGTTGTCTGAATTCTCTTCTTGCTCTCAAGAAATTCGAGCTGATAAAATGCGACAAAGGAAGTGCACTGTGTTCCCCTTCCACCCTTGGGATTCCAAAGAGGAGAGAAAGCAGGGAGTTGTATTATGGATTCCGAAGACCATTGAAGAGCTCATCGAGACAGCCATGGATCAATTAAAATGTTCTAGTGGCTCCTGCATCTTATCTGAAAATGGAGCTAAAATTATTGACATTGACATGGTTAGTGATGAAGAGAAGCTATTTTTGGTTGCTGAGACAATATAG | 2196 | 0.4144 | MEFGFFRGLPENLFLLDIAGQLAFLVDMVVRFFVAFRDTQSYTTVDSHKRIALRYLKSRFVVDFLGCLPLDAIYQVSFCGRKEPVRYLLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLVVELYCTHAAACIFYYLATTMPASQEGYTWIGSLKMGDYSYSHFRDIDLWKRYFTSLYFAIVTMATVGYGDIHAVNVREMLFVMAYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMAELISYMNRNKLGRQISNEIKHHMRSQYETSYTEAALLQDIPVSIRAKISQKLYGPYISKVSLFKGCSPGFLKQIATRVHEEIFLPGEVILEEGNMVDQLYIVCNGKLKGVGSNEDETEGPLIHLQTNDSFGEIPLLCNTPQAYTVQVVELCRLVRLDKQSFINILEIYFSDGRIILNNLLEGKGSNLRNKILESDITLYIGKREAEVAMRVNCAAYNGDLYQLRRLIEARADPNKTDYNGRSPLHFAASKGYEDITDYLIELRVNIHLSDNFGNTPLLEAIKNGHDGVTSLLVKSGALLTVEDAGNCLCMTVVRRDLNFLKRLLANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNTPLDEARIGGNKNLIKLLEEAMSAQLSEFSSCSQEIRADKMRQRKCTVFPFHPWDSKEERKQGVVLWIPKTIEELIETAMDQLKCSSGSCILSENGAKIIDIDMVSDEEKLFLVAETI* | 732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0174 | 731 | SMART | cnmp_10 | 304 | 422 | IPR000595 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat profile. | 578 | 610 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | Gene3D | - | 547 | 642 | IPR036770 | - | |
| Vvi17g0174 | 731 | Pfam | KHA, dimerisation domain of potassium ion channel | 657 | 726 | IPR021789 | - | |
| Vvi17g0174 | 731 | SUPERFAMILY | cAMP-binding domain-like | 232 | 421 | IPR018490 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat profile. | 481 | 513 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | PANTHER | POTASSIUM CHANNEL AKT1 | 1 | 727 | IPR045319 | GO:0005249|GO:0006813 | |
| Vvi17g0174 | 731 | Gene3D | Helix hairpin bin | 231 | 287 | - | - | |
| Vvi17g0174 | 731 | Pfam | Ion transport protein | 13 | 229 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Vvi17g0174 | 731 | SUPERFAMILY | Voltage-gated potassium channels | 8 | 229 | - | - | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 545 | 574 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 578 | 607 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 514 | 543 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 448 | 477 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 611 | 641 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SMART | ANK_2a | 481 | 510 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | Pfam | Ankyrin repeats (many copies) | 565 | 619 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | SUPERFAMILY | Ankyrin repeat | 438 | 633 | IPR036770 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat region circular profile. | 481 | 513 | - | - | |
| Vvi17g0174 | 731 | Gene3D | - | 442 | 546 | IPR036770 | - | |
| Vvi17g0174 | 731 | Pfam | Ankyrin repeats (3 copies) | 456 | 544 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | Gene3D | Jelly Rolls | 288 | 424 | IPR014710 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat region circular profile. | 514 | 545 | - | - | |
| Vvi17g0174 | 731 | Pfam | Cyclic nucleotide-binding domain | 325 | 408 | IPR000595 | - | |
| Vvi17g0174 | 731 | CDD | CAP_ED | 304 | 418 | IPR000595 | - | |
| Vvi17g0174 | 731 | Gene3D | - | 3 | 230 | - | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat profile. | 514 | 546 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 17 | 27 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi17g0174 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 176 | 193 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi17g0174 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 128 | 138 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi17g0174 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 220 | 229 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi17g0174 | 731 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 304 | 407 | IPR000595 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | KHA domain profile. | 658 | 731 | IPR021789 | - | |
| Vvi17g0174 | 731 | ProSiteProfiles | Ankyrin repeat region circular profile. | 578 | 610 | - | - | |
| Vvi17g0174 | 731 | FunFam | Potassium channel KAT2 | 292 | 428 | - | - | |
| Vvi17g0174 | 731 | PRINTS | Ankyrin repeat signature | 594 | 608 | IPR002110 | GO:0005515 | |
| Vvi17g0174 | 731 | PRINTS | Ankyrin repeat signature | 482 | 497 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0174 | Vvi-Chr17 | 1553776 | 1569449 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0174 | 558 | 641 | Ion Channels | AT5G37500 | 33.645 | 4.43e-08 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0174 | K21867 | - | vvi:100255971 | 1446.8 |